Project name: Ecoli_DNAK

Status: done

Started: 2025-08-08 10:11:22
Settings
Chain sequence(s) A: MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVKDKK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:59)
Show buried residues

Minimal score value
-4.3863
Maximal score value
1.131
Average score
-1.1598
Total score value
-739.9446

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7803
2 G A -0.3020
3 K A -0.9043
4 I A 0.0000
5 I A 0.0000
6 G A 0.0000
7 I A 0.0000
8 D A -0.3726
9 L A 0.0000
10 G A -0.4381
11 T A 0.0000
12 T A -0.3531
13 N A -0.8002
14 S A 0.0000
15 C A 0.0000
16 V A 0.0000
17 A A 0.0000
18 I A 0.0000
19 M A 0.0000
20 D A -2.0744
21 G A -1.6434
22 T A -1.3021
23 T A -0.9132
24 P A 0.0000
25 R A -2.0775
26 V A 0.0000
27 L A 0.0000
28 E A -2.8612
29 N A 0.0000
30 A A -1.4804
31 E A -1.6999
32 G A -1.9704
33 D A -2.1893
34 R A -2.3140
35 T A -1.5047
36 T A 0.0000
37 P A 0.0000
38 S A 0.0000
39 I A -0.1855
40 I A 0.0000
41 A A 0.0000
42 Y A -1.1773
43 T A -1.5659
44 Q A -2.5627
45 D A -2.9874
46 G A -2.0508
47 E A -2.3607
48 T A -0.7965
49 L A -0.4211
50 V A -0.0331
51 G A 0.0000
52 Q A -1.2511
53 P A -1.0929
54 A A 0.0000
55 K A -2.1287
56 R A -2.4261
57 Q A -1.3127
58 A A 0.0000
59 V A -0.5597
60 T A -0.2292
61 N A 0.0000
62 P A 0.0000
63 Q A -1.8016
64 N A -1.4416
65 T A 0.0000
66 L A 0.0000
67 F A 0.0742
68 A A 0.0000
69 I A 0.0000
70 K A 0.0000
71 R A 0.0000
72 L A 0.0000
73 I A 0.0000
74 G A -0.2705
75 R A 0.0000
76 R A -1.3775
77 F A -1.0855
78 Q A -2.2984
79 D A -2.7356
80 E A -3.2171
81 E A -2.3462
82 V A 0.0000
83 Q A -2.0580
84 R A -1.6739
85 D A 0.0000
86 V A 0.1729
87 S A 0.1890
88 I A 0.8617
89 M A 0.0000
90 P A -0.3491
91 F A 0.0000
92 K A -2.0200
93 I A 0.0000
94 I A -0.5985
95 A A -0.7857
96 A A -1.3344
97 D A -2.2842
98 N A -1.9973
99 G A -1.4093
100 D A 0.0000
101 A A 0.0000
102 W A -0.5157
103 V A 0.0000
104 E A -2.3018
105 V A 0.0000
106 K A -3.0193
107 G A -2.3882
108 Q A -2.5592
109 K A -2.2170
110 M A -0.8379
111 A A 0.0000
112 P A 0.0000
113 P A 0.0000
114 Q A -0.2916
115 I A 0.0000
116 S A 0.0000
117 A A 0.0000
118 E A 0.0000
119 V A 0.0000
120 L A 0.0000
121 K A -0.9884
122 K A -1.0113
123 M A 0.0000
124 K A -1.6573
125 K A -2.5504
126 T A 0.0000
127 A A 0.0000
128 E A -2.1720
129 D A -2.3887
130 Y A -0.4260
131 L A -0.8522
132 G A -1.4574
133 E A -2.4003
134 P A -1.7272
135 V A 0.0000
136 T A -1.0024
137 E A 0.0000
138 A A 0.0000
139 V A 0.0000
140 I A 0.0000
141 T A 0.0000
142 V A 0.0000
143 P A 0.0000
144 A A 0.0000
145 Y A 0.0466
146 F A 0.0000
147 N A -0.4325
148 D A -0.5979
149 A A -0.5630
150 Q A 0.0000
151 R A 0.0000
152 Q A -0.6930
153 A A 0.0000
154 T A 0.0000
155 K A -1.0999
156 D A 0.0000
157 A A 0.0000
158 G A 0.0000
159 R A -1.5540
160 I A 0.0000
161 A A 0.0000
162 G A -1.5489
163 L A 0.0000
164 E A -2.3850
165 V A -1.5102
166 K A -1.2676
167 R A -0.7429
168 I A 0.0000
169 I A 0.0000
170 N A 0.0000
171 E A 0.0000
172 P A 0.0000
173 T A 0.0000
174 A A 0.0000
175 A A 0.0000
176 A A 0.0000
177 L A 0.0000
178 A A -0.1035
179 Y A 0.0000
180 G A 0.0000
181 L A -0.7276
182 D A -2.4706
183 K A -2.6816
184 G A -2.0290
185 T A -1.7981
186 G A -2.2552
187 N A -2.4713
188 R A -2.2285
189 T A 0.0000
190 I A 0.0000
191 A A 0.0000
192 V A 0.0000
193 Y A 0.0000
194 D A 0.0000
195 L A 0.0000
196 G A -0.4262
197 G A -0.3705
198 G A 0.0000
199 T A 0.0000
200 F A 0.0000
201 D A 0.0000
202 I A 0.0000
203 S A 0.0000
204 I A 0.0000
205 I A 0.0000
206 E A -1.7836
207 I A 0.0000
208 D A -2.4649
209 E A -2.5878
210 V A -1.3201
211 D A -2.2957
212 G A -2.3270
213 E A -2.5563
214 K A -1.9663
215 T A -1.0171
216 F A 0.0000
217 E A -0.8010
218 V A 0.0000
219 L A -0.1510
220 A A 0.0000
221 T A 0.0000
222 N A -0.5860
223 G A -0.5144
224 D A -0.5042
225 T A -0.2243
226 H A -0.3533
227 L A 0.0000
228 G A 0.0000
229 G A 0.0000
230 E A -0.5581
231 D A 0.0000
232 F A 0.0000
233 D A 0.0000
234 S A -0.5536
235 R A -0.9072
236 L A 0.0000
237 I A -1.4193
238 N A -2.1025
239 Y A -1.4999
240 L A 0.0000
241 V A 0.0000
242 E A -3.6603
243 E A -3.0865
244 F A 0.0000
245 K A -3.5343
246 K A -4.0074
247 D A -3.6776
248 Q A -2.6876
249 G A -2.4148
250 I A -1.9855
251 D A -2.2020
252 L A 0.0000
253 R A -2.7044
254 N A -2.3433
255 D A -1.4812
256 P A -0.8473
257 L A 0.2023
258 A A 0.0000
259 M A -0.6266
260 Q A 0.0000
261 R A -0.7482
262 L A 0.0000
263 K A -1.7134
264 E A -2.7763
265 A A -2.0702
266 A A 0.0000
267 E A -2.0355
268 K A -2.2157
269 A A 0.0000
270 K A -0.8828
271 I A -0.1238
272 E A -1.5778
273 L A 0.0000
274 S A -0.7509
275 S A -0.8711
276 A A -1.0366
277 Q A -1.8227
278 Q A -2.1578
279 T A 0.0000
280 D A -3.3024
281 V A 0.0000
282 N A -2.5487
283 L A 0.0000
284 P A -0.4276
285 Y A 0.7002
286 I A 0.0000
287 T A 0.0069
288 A A -0.3372
289 D A -0.9560
290 A A -0.4119
291 T A -0.4255
292 G A -0.3941
293 P A -0.3693
294 K A -0.6579
295 H A -1.0978
296 M A 0.0000
297 N A -2.7113
298 I A -2.2203
299 K A -2.9784
300 V A 0.0000
301 T A -1.6994
302 R A -1.4489
303 A A -0.9034
304 K A -1.3527
305 L A 0.0000
306 E A -1.1247
307 S A -1.1058
308 L A -0.9178
309 V A 0.0000
310 E A -2.1770
311 D A -2.7101
312 L A -1.7840
313 V A 0.0000
314 N A -2.6284
315 R A -3.1427
316 S A 0.0000
317 I A -1.8802
318 E A -2.8159
319 P A -1.7682
320 L A 0.0000
321 K A -2.2390
322 V A -1.3496
323 A A 0.0000
324 L A 0.0000
325 Q A -1.8557
326 D A -1.4364
327 A A -0.7921
328 G A -0.9492
329 L A -0.6507
330 S A -0.5795
331 V A -0.2222
332 S A -0.7812
333 D A -1.3989
334 I A 0.0000
335 D A -1.7560
336 D A 0.0000
337 V A 0.0000
338 I A 0.0000
339 L A -0.9399
340 V A 0.0000
341 G A -0.8530
342 G A -0.8991
343 Q A 0.0000
344 T A 0.0000
345 R A -1.3524
346 M A 0.0000
347 P A -1.1079
348 M A 0.0000
349 V A 0.0000
350 Q A -2.0446
351 K A -2.4769
352 K A -1.8754
353 V A 0.0000
354 A A -2.4105
355 E A -2.7439
356 F A -1.2917
357 F A 0.0000
358 G A -1.6930
359 K A -2.2640
360 E A -3.0912
361 P A 0.0000
362 R A -2.5937
363 K A -3.2212
364 D A -2.9020
365 V A -1.8145
366 N A -1.7635
367 P A -1.4433
368 D A -1.3225
369 E A -1.0193
370 A A 0.0000
371 V A 0.0000
372 A A 0.0000
373 I A -0.1997
374 G A 0.0000
375 A A 0.0000
376 A A 0.0000
377 V A 0.0000
378 Q A 0.0000
379 G A 0.0000
380 G A 0.0000
381 V A -0.1911
382 L A 0.3118
383 T A -0.3621
384 G A -1.4283
385 D A -2.3661
386 V A -1.6794
387 K A -2.8912
388 D A -3.1674
389 V A -1.0379
390 L A 0.0297
391 L A 0.6001
392 L A 0.2423
393 D A 0.0000
394 V A 0.0000
395 T A 0.0000
396 P A 0.0000
397 L A 0.0000
398 S A 0.0000
399 L A 0.0000
400 G A 0.0000
401 I A 0.0000
402 E A -1.2721
403 T A -0.1956
404 M A 0.6871
405 G A -0.2306
406 G A -0.9007
407 V A -1.3237
408 M A 0.0000
409 T A -0.7228
410 T A -0.4573
411 L A -0.1842
412 I A 0.0000
413 A A -0.3230
414 K A -0.7368
415 N A -0.4257
416 T A -0.1784
417 T A -0.1673
418 I A 0.0000
419 P A -0.7644
420 T A -1.1766
421 K A -2.1170
422 H A -1.2921
423 S A -0.9828
424 Q A -0.6090
425 V A -0.3545
426 F A 0.0955
427 S A -0.5335
428 T A 0.0000
429 A A -1.8962
430 E A -3.6864
431 D A -3.7353
432 N A -3.2621
433 Q A -2.9018
434 S A -1.9800
435 A A -1.3231
436 V A 0.0000
437 T A -0.4741
438 I A 0.0000
439 H A -0.6741
440 V A 0.0000
441 L A 0.0000
442 Q A 0.0000
443 G A -2.3142
444 E A -3.2533
445 R A -4.3863
446 K A -3.9938
447 R A -3.7681
448 A A 0.0000
449 A A -2.1098
450 D A -3.5446
451 N A -3.0238
452 K A -2.0736
453 S A -1.1193
454 L A 0.0000
455 G A 0.0000
456 Q A -0.5703
457 F A 0.0000
458 N A -0.7661
459 L A 0.0000
460 D A -2.4232
461 G A -1.9720
462 I A 0.0000
463 N A -2.0812
464 P A -2.0027
465 A A -1.9289
466 P A -2.4019
467 R A -3.4331
468 G A -1.4823
469 M A -0.3464
470 P A -1.1167
471 Q A -1.2189
472 I A 0.0000
473 E A -1.8193
474 V A 0.0000
475 T A -1.0797
476 F A 0.0000
477 D A -1.4367
478 I A 0.0000
479 D A -0.9424
480 A A -0.3434
481 D A 0.0000
482 G A 0.0000
483 I A 0.0000
484 L A -0.6931
485 H A -1.0137
486 V A -0.2059
487 S A -1.0748
488 A A 0.0000
489 K A -3.6322
490 D A -3.3021
491 K A -3.5222
492 N A -2.7488
493 S A -2.4835
494 G A -3.0187
495 K A -3.9373
496 E A -3.9874
497 Q A -3.1873
498 K A -2.6986
499 I A -1.0754
500 T A -0.2126
501 I A 0.8649
502 K A -0.6441
503 A A -0.6063
504 S A -0.3879
505 S A -0.7866
506 G A -0.7085
507 L A -1.3425
508 N A -2.3266
509 E A -3.0519
510 D A -3.5136
511 E A -2.9745
512 I A 0.0000
513 Q A -3.2867
514 K A -3.8934
515 M A 0.0000
516 V A -2.7353
517 R A -3.8172
518 D A -3.3490
519 A A -2.5463
520 E A -3.2923
521 A A -2.3148
522 N A -2.2537
523 A A -2.1681
524 E A -2.5595
525 A A -2.3446
526 D A -2.8247
527 R A -3.5185
528 K A -3.4168
529 F A -2.5675
530 E A -3.1420
531 E A -2.8382
532 L A -2.2079
533 V A -0.8139
534 Q A -2.2570
535 T A 0.0000
536 R A -2.6531
537 N A -2.5497
538 Q A -2.7298
539 G A 0.0000
540 D A -3.5238
541 H A -2.9717
542 L A -1.9927
543 L A 0.0000
544 H A -2.8638
545 S A -2.1234
546 T A 0.0000
547 R A -3.9082
548 K A -3.5941
549 Q A -2.7114
550 V A 0.0000
551 E A -3.9457
552 E A -3.7946
553 A A 0.0000
554 G A -2.8306
555 D A -3.0062
556 K A -2.5201
557 L A 0.0000
558 P A -1.6110
559 A A -1.5688
560 D A -2.3064
561 D A -1.8090
562 K A -2.1443
563 T A -1.6760
564 A A -1.4458
565 I A 0.0000
566 E A -2.4778
567 S A -1.2799
568 A A -1.5387
569 L A 0.0000
570 T A -1.1000
571 A A -0.9895
572 L A 0.0000
573 E A -2.0771
574 T A -1.2770
575 A A -1.9701
576 L A -2.3724
577 K A -2.6872
578 G A -2.6331
579 E A -3.1936
580 D A -3.2694
581 K A -2.3919
582 A A -1.4198
583 A A -1.5658
584 I A 0.0000
585 E A -2.3328
586 A A -1.5772
587 K A -2.0022
588 M A -2.1631
589 Q A -2.5645
590 E A -2.6363
591 L A 0.0000
592 A A -1.6356
593 Q A -2.2859
594 V A -1.4886
595 S A -1.5784
596 Q A -1.5720
597 K A -1.7228
598 L A 0.0000
599 M A -0.9180
600 E A -2.5801
601 I A -1.9585
602 A A -2.2890
603 Q A -2.9566
604 Q A -3.2013
605 Q A -3.1727
606 H A -3.3321
607 A A -2.7402
608 Q A -3.1549
609 Q A -3.1688
610 Q A -2.8955
611 T A -2.0272
612 A A -1.8082
613 G A -1.6305
614 A A -1.4254
615 D A -2.1429
616 A A -1.3157
617 S A -1.3371
618 A A -1.3719
619 N A -2.1033
620 N A -2.5036
621 A A -2.2536
622 K A -3.2378
623 D A -4.1012
624 D A -3.6321
625 D A -1.9129
626 V A 0.9373
627 V A 1.1310
628 D A -0.8568
629 A A -0.7712
630 E A -1.7643
631 F A -0.2851
632 E A -1.9489
633 E A -2.1833
634 V A -0.8696
635 K A -2.9977
636 D A -3.6232
637 K A -3.5867
638 K A -3.1830
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Laboratory of Theory of Biopolymers 2018