Project name: query_structure

Status: done

Started: 2026-03-17 01:00:21
Settings
Chain sequence(s) A: RWCVYAYVRVRGVLVRYRRCW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:16)
Show buried residues

Minimal score value
-1.1343
Maximal score value
2.0722
Average score
0.5654
Total score value
11.8734

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -0.6525
2 W A 0.8236
3 C A 0.9485
4 V A 1.3105
5 Y A 1.1601
6 A A 0.8772
7 Y A 1.2638
8 V A 0.5744
9 R A -0.1957
10 V A 0.2786
11 R A -1.1343
12 G A -0.2425
13 V A 1.6307
14 L A 2.0722
15 V A 1.4113
16 R A -0.0994
17 Y A 0.3117
18 R A -0.4971
19 R A -0.0411
20 C A 0.8763
21 W A 1.1971
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Laboratory of Theory of Biopolymers 2018