| Chain sequence(s) |
A: FKGH
C: FKGH B: FKGH E: FKGH D: FKGH G: FKGH F: FKGH I: FKGH H: FKGH K: FKGH J: FKGH L: FKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:45)
[INFO] Main: Simulation completed successfully. (00:01:47)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.0333 | |
| 2 | K | A | -0.9490 | |
| 3 | G | A | -1.1223 | |
| 4 | H | A | -1.3388 | |
| 1 | F | B | 1.9701 | |
| 2 | K | B | -0.6131 | |
| 3 | G | B | -1.0275 | |
| 4 | H | B | -1.7067 | |
| 1 | F | C | 2.0048 | |
| 2 | K | C | 0.0000 | |
| 3 | G | C | -0.9456 | |
| 4 | H | C | -1.9483 | |
| 1 | F | D | 2.4043 | |
| 2 | K | D | 0.0455 | |
| 3 | G | D | -0.6910 | |
| 4 | H | D | -1.4277 | |
| 1 | F | E | 0.4339 | |
| 2 | K | E | -1.5872 | |
| 3 | G | E | 0.0000 | |
| 4 | H | E | -2.1138 | |
| 1 | F | F | 1.5202 | |
| 2 | K | F | -1.5185 | |
| 3 | G | F | -1.2360 | |
| 4 | H | F | -1.9675 | |
| 1 | F | G | 1.2442 | |
| 2 | K | G | -1.5947 | |
| 3 | G | G | -1.5716 | |
| 4 | H | G | -2.0964 | |
| 1 | F | H | 1.1871 | |
| 2 | K | H | -1.8894 | |
| 3 | G | H | -1.7543 | |
| 4 | H | H | -2.4289 | |
| 1 | F | I | 1.4473 | |
| 2 | K | I | -1.6167 | |
| 3 | G | I | -1.3718 | |
| 4 | H | I | -2.2673 | |
| 1 | F | J | 0.8119 | |
| 2 | K | J | -1.3482 | |
| 3 | G | J | -1.4227 | |
| 4 | H | J | -2.3091 | |
| 1 | F | K | 1.0331 | |
| 2 | K | K | -1.4022 | |
| 3 | G | K | -1.5309 | |
| 4 | H | K | -2.0291 | |
| 1 | F | L | 0.4764 | |
| 2 | K | L | -2.0247 | |
| 3 | G | L | -1.6070 | |
| 4 | H | L | -1.9002 |