Project name: query_structure

Status: done

Started: 2026-03-16 23:35:10
Settings
Chain sequence(s) A: GSSVSSVPTKLEVVAATPTSLLISWDAGYYMNYYMVDYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVYAYWYDEYGQYWWSESPSSINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:40)
Show buried residues

Minimal score value
-2.6076
Maximal score value
1.6921
Average score
-0.301
Total score value
-31.006

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.4057
2 S A -0.0324
3 S A 0.3344
4 V A 1.5585
5 S A 0.5684
6 S A 0.4508
7 V A -0.2631
8 P A 0.0000
9 T A -1.7060
10 K A -2.6076
11 L A 0.0000
12 E A -1.6003
13 V A 0.2745
14 V A 1.6401
15 A A 0.9513
16 A A 0.3287
17 T A -0.1892
18 P A -0.8121
19 T A -0.5401
20 S A -0.3022
21 L A 0.0000
22 L A 0.8336
23 I A 0.0000
24 S A -0.6761
25 W A 0.0000
26 D A -2.3481
27 A A -0.7374
28 G A 0.1553
29 Y A 1.6921
30 Y A 0.0000
31 M A 1.2252
32 N A -0.0900
33 Y A 1.4816
34 Y A 1.1965
35 M A 1.6578
36 V A 0.0000
37 D A 0.0607
38 Y A 0.1200
39 Y A 0.0000
40 R A -0.4175
41 I A 0.0000
42 T A 0.0000
43 Y A -0.4543
44 G A 0.0000
45 E A -1.5832
46 T A -1.3901
47 G A -1.3831
48 G A -1.2749
49 N A -1.6745
50 S A -0.8738
51 P A -0.3469
52 V A 0.2919
53 Q A -1.2157
54 E A -1.8401
55 F A -0.7025
56 T A -0.1833
57 V A 0.0091
58 P A -0.3384
59 G A 0.0000
60 S A -0.2151
61 S A -0.4461
62 S A -0.6006
63 T A -0.2009
64 A A 0.0000
65 T A 0.3257
66 I A 0.0000
67 S A -0.4685
68 G A -0.6805
69 L A 0.0000
70 S A -0.8701
71 P A -1.0243
72 G A -1.1597
73 V A -1.0829
74 D A -1.9284
75 Y A 0.0000
76 T A -0.8271
77 I A 0.0000
78 T A -0.4673
79 V A 0.0000
80 Y A -0.0214
81 A A 0.0000
82 Y A 0.9747
83 W A 0.0000
84 Y A 0.7528
85 D A -0.1700
86 E A -1.3552
87 Y A 0.0601
88 G A -0.4291
89 Q A -0.4935
90 Y A 0.6780
91 W A 1.0507
92 W A 0.9445
93 S A 0.0000
94 E A -1.5721
95 S A -1.0151
96 P A -0.5687
97 S A -0.7405
98 S A -0.7263
99 I A -0.7617
100 N A -1.7143
101 Y A -1.4620
102 R A -2.4061
103 T A -1.2269
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018