Project name: e1674cdb0b5589d

Status: done

Started: 2025-06-03 05:22:45
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTDYTIHWVRQATGQGLEWMGWIYPLRGSINYAQKFQGRVTMTADKSISTVYMELSSLRSEDTAVYFCARHGAYYSNAFDYWGQGTLVTVSS
L: EIVMTQSPATLSVSPGERATLSCRASESVDNDGIRFLHWYQQKPGQAPRLLIYRASTRATGIPARFSGSGSRTEFTLTISSLQSEDFAVYYCQQSNKDPYTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:20)
Show buried residues

Minimal score value
-3.1854
Maximal score value
1.8721
Average score
-0.6257
Total score value
-144.5276

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4695
2 V H -1.0129
3 Q H -1.3075
4 L H 0.0000
5 V H 0.1039
6 Q H 0.0000
7 S H -0.5327
8 G H -0.5186
9 A H 0.1803
11 E H 0.0213
12 V H 1.0075
13 K H -0.8405
14 K H -2.0616
15 P H -2.0858
16 G H -1.4458
17 A H -1.1333
18 S H -1.2419
19 V H 0.0000
20 K H -1.8764
21 V H 0.0000
22 S H -0.4755
23 C H 0.0000
24 K H -0.3864
25 A H 0.0000
26 S H -0.6387
27 G H -1.0526
28 Y H -0.5536
29 T H -0.3107
30 F H 0.0000
35 T H -0.9016
36 D H -0.9169
37 Y H 0.1725
38 T H 0.3857
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5039
45 A H -0.8505
46 T H -0.5816
47 G H -1.1254
48 Q H -1.6903
49 G H -1.0915
50 L H 0.0000
51 E H -0.7782
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 W H 0.4854
56 I H 0.0000
57 Y H 0.0037
58 P H 0.0000
59 L H -0.9683
62 R H -1.8381
63 G H -1.0000
64 S H -0.2585
65 I H 0.6476
66 N H -0.0753
67 Y H -0.7929
68 A H 0.0000
69 Q H -2.8123
70 K H -2.7464
71 F H 0.0000
72 Q H -2.4971
74 G H -1.6567
75 R H -1.5334
76 V H 0.0000
77 T H -0.5730
78 M H 0.0000
79 T H -0.3267
80 A H -0.7049
81 D H -1.0241
82 K H -1.3757
83 S H -0.2168
84 I H 0.9040
85 S H -0.2408
86 T H 0.0000
87 V H 0.0000
88 Y H -0.4697
89 M H 0.0000
90 E H -1.1040
91 L H 0.0000
92 S H -1.0354
93 S H -1.1471
94 L H 0.0000
95 R H -2.6822
96 S H -2.1670
97 E H -2.4243
98 D H 0.0000
99 T H -0.6769
100 A H 0.0000
101 V H 0.4145
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 H H 0.0000
108 G H 0.3081
109 A H 0.7844
110 Y H 1.7889
111 Y H 1.8721
112 S H 0.7519
113 N H 0.1328
114 A H 0.0000
115 F H 0.0000
116 D H -0.5469
117 Y H -0.4161
118 W H -0.4314
119 G H 0.0000
120 Q H -1.2565
121 G H -0.5013
122 T H 0.0000
123 L H 0.7214
124 V H 0.0000
125 T H -0.0977
126 V H 0.0000
127 S H -1.0422
128 S H -0.9077
1 E L -2.1985
2 I L 0.0000
3 V L 0.5685
4 M L 0.0000
5 T L -0.6502
6 Q L -0.7117
7 S L -0.8063
8 P L -0.4852
9 A L -0.4872
10 T L -0.6168
11 L L -0.2353
12 S L -0.2824
13 V L 0.0000
14 S L -1.3165
15 P L -1.4524
16 G L -2.0406
17 E L -3.0964
18 R L -2.9307
19 A L 0.0000
20 T L -0.5448
21 L L 0.0000
22 S L -0.8561
23 C L 0.0000
24 R L -2.5803
25 A L 0.0000
26 S L -1.4470
27 E L -2.6005
28 S L -2.6692
29 V L 0.0000
30 D L -2.5062
31 N L -2.6759
34 D L -2.6022
35 G L -1.8946
36 I L -1.2308
37 R L -1.6122
38 F L -0.8452
39 L L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.3685
46 P L -0.9448
47 G L -1.3997
48 Q L -2.0228
49 A L -1.3032
50 P L 0.0000
51 R L -1.4750
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.3002
56 R L -0.5995
57 A L 0.0000
65 S L -0.5894
66 T L -0.7014
67 R L -1.1863
68 A L -0.8442
69 T L -0.6081
70 G L -0.6692
71 I L 0.0000
72 P L -0.4293
74 A L -0.3682
75 R L -0.6276
76 F L 0.0000
77 S L -0.4582
78 G L 0.0000
79 S L -0.5693
80 G L -1.3578
83 S L -1.9769
84 R L -3.1854
85 T L -2.6862
86 E L -2.4547
87 F L 0.0000
88 T L -0.6782
89 L L 0.0000
90 T L -0.5578
91 I L 0.0000
92 S L -1.3749
93 S L -1.8153
94 L L 0.0000
95 Q L -1.6885
96 S L -0.9958
97 E L -1.6009
98 D L 0.0000
99 F L -0.3178
100 A L 0.0000
101 V L -0.4453
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L 0.0000
108 N L -1.7814
109 K L -2.5014
114 D L -2.0353
115 P L -1.8563
116 Y L 0.0000
117 T L -0.4818
118 F L 0.0000
119 G L 0.0000
120 G L -0.7428
121 G L -0.8124
122 T L 0.0000
123 K L -1.2373
124 V L 0.0000
125 E L -0.1097
126 I L 0.7292
127 K L -1.0460
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018