Project name: 62e01ef6a306dd7 [mutate: FS29H]

Status: done

Started: 2024-06-18 06:44:08
Settings
Chain sequence(s) H: ELQLVESGGGLVQPGGSLRLSCAASRSIFGIYDMGWFRQAPGKEREWVSSVSNGVAFYADSVKGRFTISRDRAKNSVYLQMNSLRAEDTAVYYCRAVAHSTNTYWGQGTLVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues FS29H
Energy difference between WT (input) and mutated protein (by FoldX) 0.182066 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:23)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:24)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:43)
Show buried residues

Minimal score value
-4.0812
Maximal score value
1.6994
Average score
-0.7272
Total score value
-83.6232

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.1763
2 L H -1.4850
3 Q H -1.5632
4 L H 0.0000
5 V H 0.6500
6 E H 0.0000
7 S H -0.3330
8 G H -0.8574
9 G H 0.1204
10 G H 0.6488
11 L H 1.4408
12 V H 0.0077
13 Q H -1.2902
14 P H -1.5125
15 G H -1.3392
16 G H -0.8440
17 S H -1.0047
18 L H -0.8811
19 R H -2.1115
20 L H 0.0000
21 S H -0.5236
22 C H 0.0000
23 A H -0.5463
24 A H -0.9897
25 S H -1.6460
26 R H -2.7920
27 S H -1.4191
28 I H -0.5946
29 S H -0.3220 mutated: FS29H
30 G H -0.1141
31 I H 0.4382
32 Y H 0.9000
33 D H 0.0518
34 M H 0.0000
35 G H 0.0000
36 W H 0.0000
37 F H 0.0000
38 R H 0.0000
39 Q H -2.1212
40 A H -1.9263
41 P H -1.5190
42 G H -2.0448
43 K H -3.5640
44 E H -4.0812
45 R H -3.7713
46 E H -2.6619
47 W H -0.6484
48 V H 0.0000
49 S H 0.0000
50 S H 0.0000
51 V H 0.0000
52 S H 0.2844
54 N H -0.9183
55 G H -0.0963
56 V H 1.5619
57 A H 1.1888
58 F H 1.5699
59 Y H -0.0561
60 A H -1.1447
61 D H -2.2950
62 S H -1.8568
63 V H 0.0000
64 K H -2.4286
65 G H -1.7718
66 R H -1.4371
67 F H 0.0000
68 T H -0.6700
69 I H 0.0000
70 S H -0.7823
71 R H -2.1852
72 D H -2.5109
73 R H -3.3376
74 A H -2.2475
75 K H -2.9632
76 N H -2.5382
77 S H 0.0000
78 V H 0.0000
79 Y H -0.8046
80 L H 0.0000
81 Q H -1.2023
82 M H 0.0000
82A N H -1.3763
82B S H -1.2163
82C L H 0.0000
83 R H -2.3567
84 A H -1.7810
85 E H -2.2765
86 D H 0.0000
87 T H -0.3888
88 A H 0.0000
89 V H 0.4599
90 Y H 0.0000
91 Y H -0.0609
92 C H 0.0000
93 R H -0.1444
94 A H 0.0000
95 V H 0.0000
96 A H -0.6129
97 H H -1.2853
98 S H -0.9031
99 T H -0.8736
100 N H -0.9699
101 T H -0.2374
102 Y H -0.1047
103 W H 0.0273
104 G H -0.2518
105 Q H -0.9382
106 G H 0.0000
107 T H 0.0000
108 L H 1.6994
109 V H 0.0000
110 T H 0.3369
111 V H 0.0000
112 S H -0.8148
113 S H -0.4867
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018