| Chain sequence(s) |
A: HSQGTFTSDYSKYLDSRRAQDFVCWLMDT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | QE20A,DD28A,CR24A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -1.21937 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:08)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:33)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:42)
[INFO] Main: Simulation completed successfully. (00:00:43)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | H | A | -1.3473 | |
| 2 | S | A | -1.3317 | |
| 3 | Q | A | -1.3796 | |
| 4 | G | A | -0.4559 | |
| 5 | T | A | -0.0318 | |
| 6 | F | A | 1.0583 | |
| 7 | T | A | 0.1281 | |
| 8 | S | A | -0.7188 | |
| 9 | D | A | -1.3889 | |
| 10 | Y | A | -0.0613 | |
| 11 | S | A | -1.2017 | |
| 12 | K | A | -2.5581 | |
| 13 | Y | A | -1.4823 | |
| 14 | L | A | -1.9560 | |
| 15 | D | A | -3.7321 | |
| 16 | S | A | -2.8464 | |
| 17 | R | A | -3.9070 | |
| 18 | R | A | -3.9597 | |
| 19 | A | A | -2.2798 | |
| 20 | E | A | -2.9657 | mutated: QE20A |
| 21 | D | A | -2.4339 | |
| 22 | F | A | 0.5932 | |
| 23 | V | A | 0.8267 | |
| 24 | R | A | -0.7715 | mutated: CR24A |
| 25 | W | A | 1.0278 | |
| 26 | L | A | 1.6542 | |
| 27 | M | A | 0.9462 | |
| 28 | D | A | -0.5556 | mutated: DD28A |
| 29 | T | A | -0.0010 |