Project name: e187197fa1a084b

Status: done

Started: 2026-02-11 06:50:33
Settings
Chain sequence(s) A: GSGHKFF
C: GSGHKFF
B: GSGHKFF
D: GSGHKFF
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:43)
Show buried residues

Minimal score value
-1.8096
Maximal score value
3.7752
Average score
-0.0238
Total score value
-0.6655

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.9034
2 S A -1.1368
3 G A -1.5903
4 H A -1.5790
5 K A -0.3202
6 F A 2.6073
7 F A 3.3206
1 G B -1.1178
2 S B -1.2022
3 G B -1.6550
4 H B -1.3098
5 K B 0.1034
6 F B 2.3546
7 F B 3.7752
1 G C -1.1479
2 S C -1.1832
3 G C -1.7141
4 H C -1.5422
5 K C -0.3045
6 F C 2.3273
7 F C 3.5519
1 G D -0.9824
2 S D -1.0594
3 G D -1.7773
4 H D -1.8096
5 K D -0.9619
6 F D 1.6985
7 F D 2.8927
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018