| Chain sequence(s) |
A: GSGHKFF
C: GSGHKFF B: GSGHKFF D: GSGHKFF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:42)
[INFO] Main: Simulation completed successfully. (00:00:43)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.9034 | |
| 2 | S | A | -1.1368 | |
| 3 | G | A | -1.5903 | |
| 4 | H | A | -1.5790 | |
| 5 | K | A | -0.3202 | |
| 6 | F | A | 2.6073 | |
| 7 | F | A | 3.3206 | |
| 1 | G | B | -1.1178 | |
| 2 | S | B | -1.2022 | |
| 3 | G | B | -1.6550 | |
| 4 | H | B | -1.3098 | |
| 5 | K | B | 0.1034 | |
| 6 | F | B | 2.3546 | |
| 7 | F | B | 3.7752 | |
| 1 | G | C | -1.1479 | |
| 2 | S | C | -1.1832 | |
| 3 | G | C | -1.7141 | |
| 4 | H | C | -1.5422 | |
| 5 | K | C | -0.3045 | |
| 6 | F | C | 2.3273 | |
| 7 | F | C | 3.5519 | |
| 1 | G | D | -0.9824 | |
| 2 | S | D | -1.0594 | |
| 3 | G | D | -1.7773 | |
| 4 | H | D | -1.8096 | |
| 5 | K | D | -0.9619 | |
| 6 | F | D | 1.6985 | |
| 7 | F | D | 2.8927 |