| Chain sequence(s) |
A: GVSHWM
C: GVSHWM B: GVSHWM E: GVSHWM D: GVSHWM G: GVSHWM F: GVSHWM I: GVSHWM H: GVSHWM J: GVSHWM input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,J |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:18)
[INFO] Main: Simulation completed successfully. (00:00:21)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | G | C | -0.7742 | |
| 3 | V | C | 0.0000 | |
| 4 | S | C | -0.0222 | |
| 5 | H | C | 0.0000 | |
| 6 | W | C | 1.7009 | |
| 7 | M | C | 2.0578 | |
| 2 | G | A | -0.4877 | |
| 3 | V | A | -0.0001 | |
| 4 | S | A | 0.0152 | |
| 5 | H | A | 0.7605 | |
| 6 | W | A | 1.8630 | |
| 7 | M | A | 2.0155 | |
| 2 | G | B | -0.6512 | |
| 3 | V | B | -0.3277 | |
| 4 | S | B | -0.0794 | |
| 5 | H | B | 0.8408 | |
| 6 | W | B | 1.9172 | |
| 7 | M | B | 2.0573 | |
| 2 | G | E | -0.9366 | |
| 3 | V | E | 0.0000 | |
| 4 | S | E | -0.1281 | |
| 5 | H | E | 0.0000 | |
| 6 | W | E | 1.7411 | |
| 7 | M | E | 1.9994 | |
| 2 | G | D | -0.8659 | |
| 3 | V | D | 0.0000 | |
| 4 | S | D | -0.0840 | |
| 5 | H | D | 0.0000 | |
| 6 | W | D | 1.8048 | |
| 7 | M | D | 2.0465 | |
| 2 | G | F | -0.9409 | |
| 3 | V | F | 0.0000 | |
| 4 | S | F | -0.1777 | |
| 5 | H | F | 0.0000 | |
| 6 | W | F | 1.6656 | |
| 7 | M | F | 2.0668 | |
| 2 | G | G | -0.7308 | |
| 3 | V | G | 0.0000 | |
| 4 | S | G | 0.0772 | |
| 5 | H | G | 0.0000 | |
| 6 | W | G | 1.7622 | |
| 7 | M | G | 1.9641 | |
| 2 | G | I | -0.4249 | |
| 3 | V | I | 0.1121 | |
| 4 | S | I | 0.1524 | |
| 5 | H | I | 0.9486 | |
| 6 | W | I | 1.6105 | |
| 7 | M | I | 1.8469 | |
| 2 | G | H | -0.4147 | |
| 3 | V | H | 0.0000 | |
| 4 | S | H | 0.3646 | |
| 5 | H | H | 0.0000 | |
| 6 | W | H | 1.6292 | |
| 7 | M | H | 1.8690 | |
| 2 | G | J | 0.1416 | |
| 3 | V | J | 1.2688 | |
| 4 | S | J | 0.7249 | |
| 5 | H | J | 1.0318 | |
| 6 | W | J | 1.7957 | |
| 7 | M | J | 1.9258 |