Project name: query_structure

Status: done

Started: 2026-03-16 23:18:12
Settings
Chain sequence(s) A: GCEGKQCGLFRSCGGGCRCWPTVTPGVGICSSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:09)
Show buried residues

Minimal score value
-2.0199
Maximal score value
1.6642
Average score
-0.337
Total score value
-11.1222

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.0662
2 C A -1.5091
3 E A -2.0199
4 G A -1.4259
5 K A -1.5514
6 Q A -0.4971
7 C A 0.0000
8 G A 0.7539
9 L A 1.6642
10 F A 1.4228
11 R A -0.6827
12 S A -0.9376
13 C A -1.3189
14 G A -1.4113
15 G A -1.1311
16 G A -1.3444
17 C A -1.3712
18 R A -1.4208
19 C A -0.0038
20 W A 1.1713
21 P A 0.7536
22 T A 1.1577
23 V A 1.6031
24 T A 0.5765
25 P A -0.0827
26 G A 0.4290
27 V A 0.8953
28 G A 0.0000
29 I A 0.1871
30 C A 0.0000
31 S A -1.1980
32 S A -1.4607
33 S A -1.3039
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018