| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCTASGFTFSSFGLGWFRQAPGQEREAVAAISSGSSTIYYADSVKGRFTISRDNAKNTVTLQMNNLKPEDTAIYYCAREGGYYYGRSYYTMDYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:31)
[INFO] Main: Simulation completed successfully. (00:01:32)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3082 | |
| 2 | V | A | -0.4762 | |
| 3 | Q | A | -0.3743 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.2164 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.4868 | |
| 8 | G | A | -1.2232 | |
| 9 | G | A | -1.1538 | |
| 10 | G | A | -0.9383 | |
| 11 | S | A | -0.7294 | |
| 12 | V | A | -0.8995 | |
| 13 | Q | A | -1.8477 | |
| 14 | A | A | -2.0482 | |
| 15 | G | A | -1.9363 | |
| 16 | G | A | -1.4761 | |
| 17 | S | A | -1.5225 | |
| 18 | L | A | -1.2085 | |
| 19 | R | A | -2.1205 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4912 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.1303 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.5789 | |
| 26 | G | A | -0.8006 | |
| 27 | F | A | -0.2461 | |
| 28 | T | A | -0.2101 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -0.7138 | |
| 31 | S | A | -0.4021 | |
| 32 | F | A | 0.0960 | |
| 33 | G | A | 0.0000 | |
| 34 | L | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | -0.1906 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.7023 | |
| 40 | A | A | -1.7035 | |
| 41 | P | A | -1.1723 | |
| 42 | G | A | -1.6668 | |
| 43 | Q | A | -2.7966 | |
| 44 | E | A | -3.2616 | |
| 45 | R | A | -2.5083 | |
| 46 | E | A | -2.1506 | |
| 47 | A | A | -0.5104 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | -0.0023 | |
| 53 | S | A | -0.5808 | |
| 54 | G | A | -0.8330 | |
| 55 | S | A | -0.4894 | |
| 56 | S | A | -0.2066 | |
| 57 | T | A | 0.4562 | |
| 58 | I | A | 1.5419 | |
| 59 | Y | A | 1.0249 | |
| 60 | Y | A | -0.1743 | |
| 61 | A | A | -1.1854 | |
| 62 | D | A | -2.3237 | |
| 63 | S | A | -1.7020 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4929 | |
| 66 | G | A | -1.8811 | |
| 67 | R | A | -1.6355 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.5956 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.3328 | |
| 72 | R | A | -1.2114 | |
| 73 | D | A | -1.7809 | |
| 74 | N | A | -1.9882 | |
| 75 | A | A | -1.5030 | |
| 76 | K | A | -2.3574 | |
| 77 | N | A | -1.7518 | |
| 78 | T | A | -1.0856 | |
| 79 | V | A | 0.0000 | |
| 80 | T | A | -0.7534 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.1717 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.9787 | |
| 85 | N | A | -2.4194 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.9413 | |
| 88 | P | A | -2.0478 | |
| 89 | E | A | -2.4205 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.1675 | |
| 92 | A | A | 0.0000 | |
| 93 | I | A | -0.3042 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.0498 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | R | A | 0.0000 | |
| 99 | E | A | 0.3180 | |
| 100 | G | A | 0.4262 | |
| 101 | G | A | 0.7967 | |
| 102 | Y | A | 1.9900 | |
| 103 | Y | A | 2.0370 | |
| 104 | Y | A | 1.4712 | |
| 105 | G | A | -0.0353 | |
| 106 | R | A | -0.6804 | |
| 107 | S | A | 0.5196 | |
| 108 | Y | A | 1.6106 | |
| 109 | Y | A | 1.5797 | |
| 110 | T | A | 0.8252 | |
| 111 | M | A | 0.2162 | |
| 112 | D | A | -0.5050 | |
| 113 | Y | A | 0.4061 | |
| 114 | W | A | 0.5158 | |
| 115 | G | A | 0.1956 | |
| 116 | Q | A | -0.7363 | |
| 117 | G | A | 0.0000 | |
| 118 | T | A | -0.6476 | |
| 119 | Q | A | -1.2223 | |
| 120 | V | A | 0.0000 | |
| 121 | T | A | -1.0320 | |
| 122 | V | A | 0.0000 | |
| 123 | S | A | -1.3101 | |
| 124 | S | A | -0.9644 |