Project name: e22a1c58c7e195c

Status: done

Started: 2026-02-12 15:47:33
Settings
Chain sequence(s) A: IVIVKGH
C: IVIVKGH
B: IVIVKGH
E: IVIVKGH
D: IVIVKGH
G: IVIVKGH
F: IVIVKGH
I: IVIVKGH
H: IVIVKGH
K: IVIVKGH
J: IVIVKGH
M: IVIVKGH
L: IVIVKGH
O: IVIVKGH
N: IVIVKGH
Q: IVIVKGH
P: IVIVKGH
S: IVIVKGH
R: IVIVKGH
T: IVIVKGH
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:31)
Show buried residues

Minimal score value
-2.5264
Maximal score value
4.0552
Average score
0.2493
Total score value
34.901

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 I A 2.5677
2 V A 0.0000
3 I A 1.0155
4 V A 0.0000
5 K A -1.8063
6 G A -1.8127
7 H A -2.3573
1 I B 2.6315
2 V B 0.0000
3 I B 1.0673
4 V B 0.0000
5 K B -2.0070
6 G B -2.0010
7 H B -2.4707
1 I C 2.8178
2 V C 2.2973
3 I C 1.1888
4 V C 0.0429
5 K C -1.9577
6 G C -1.7386
7 H C -2.1547
1 I D 3.6375
2 V D 4.0552
3 I D 3.0763
4 V D 1.9822
5 K D -1.0241
6 G D -1.7077
7 H D -2.1666
1 I E 2.8438
2 V E 3.6880
3 I E 0.0000
4 V E 1.8363
5 K E -0.2401
6 G E -1.5054
7 H E -2.4222
1 I F 2.2311
2 V F 2.6605
3 I F 0.0000
4 V F 1.8603
5 K F 0.0000
6 G F -1.0670
7 H F -2.1869
1 I G 2.0416
2 V G 2.5197
3 I G 0.0000
4 V G 1.7906
5 K G 0.0000
6 G G -0.9649
7 H G -2.1342
1 I H 2.0355
2 V H 2.5187
3 I H 0.0000
4 V H 1.7356
5 K H 0.0000
6 G H -1.0138
7 H H -2.1655
1 I I 2.0612
2 V I 2.5388
3 I I 0.0000
4 V I 1.6557
5 K I 0.1753
6 G I -1.0956
7 H I -2.1843
1 I J 2.0758
2 V J 2.5529
3 I J 0.0000
4 V J 1.5886
5 K J 0.0451
6 G J -1.1473
7 H J -2.1975
1 I K 2.0562
2 V K 2.5489
3 I K 0.0000
4 V K 1.5679
5 K K 0.0372
6 G K -1.1622
7 H K -2.1899
1 I L 2.3613
2 V L 2.6505
3 I L 0.0000
4 V L 1.7243
5 K L 0.0435
6 G L -1.1756
7 H L -2.1816
1 I M 2.7954
2 V M 3.4169
3 I M 0.0000
4 V M 1.8922
5 K M 0.1327
6 G M -1.2290
7 H M -2.2775
1 I N 3.4271
2 V N 3.9508
3 I N 2.8590
4 V N 2.0905
5 K N -0.2992
6 G N -1.2745
7 H N -2.0379
1 I O 3.2770
2 V O 0.0000
3 I O 2.2842
4 V O 0.0000
5 K O -2.0901
6 G O -1.7182
7 H O -2.1038
1 I P 3.8738
2 V P 0.0000
3 I P 1.6572
4 V P 0.0000
5 K P -1.9352
6 G P -2.1970
7 H P -2.5264
1 I Q 3.2489
2 V Q 0.0000
3 I Q 1.4056
4 V Q 0.0000
5 K Q -1.7046
6 G Q -1.7356
7 H Q -2.3772
1 I R 2.9748
2 V R 0.0000
3 I R 1.1519
4 V R 0.0000
5 K R -1.4362
6 G R -1.6664
7 H R -2.3302
1 I S 2.6025
2 V S 0.0000
3 I S 1.0886
4 V S 0.0000
5 K S -1.6764
6 G S -1.7527
7 H S -2.3395
1 I T 2.5650
2 V T 0.0000
3 I T 1.0338
4 V T 0.0000
5 K T -1.5764
6 G T -1.7629
7 H T -2.3665
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018