Project name: EAK16-II_20

Status: done

Started: 2026-06-25 01:25:43
Settings
Chain sequence(s) A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK
B: AEAEAKAKAEAEAKAK
E: AEAEAKAKAEAEAKAK
D: AEAEAKAKAEAEAKAK
G: AEAEAKAKAEAEAKAK
F: AEAEAKAKAEAEAKAK
I: AEAEAKAKAEAEAKAK
H: AEAEAKAKAEAEAKAK
K: AEAEAKAKAEAEAKAK
J: AEAEAKAKAEAEAKAK
M: AEAEAKAKAEAEAKAK
L: AEAEAKAKAEAEAKAK
O: AEAEAKAKAEAEAKAK
N: AEAEAKAKAEAEAKAK
Q: AEAEAKAKAEAEAKAK
P: AEAEAKAKAEAEAKAK
S: AEAEAKAKAEAEAKAK
R: AEAEAKAKAEAEAKAK
T: AEAEAKAKAEAEAKAK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:15:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:15:24)
Show buried residues

Minimal score value
-4.5272
Maximal score value
0.0
Average score
-2.9051
Total score value
-929.6301

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.5563
2 E A -2.6580
3 A A -2.4969
4 E A -3.3509
5 A A -3.0224
6 K A -3.5839
7 A A -3.3693
8 K A -3.3623
9 A A -3.3297
10 E A -3.6795
11 A A -3.1384
12 E A -3.6919
13 A A 0.0000
14 K A -3.4040
15 A A -2.4278
16 K A -3.5056
1 A B -1.9978
2 E B -3.4673
3 A B -3.4298
4 E B -3.0544
5 A B -2.5027
6 K B -3.2853
7 A B -2.6324
8 K B -3.0916
9 A B -2.5419
10 E B -3.4053
11 A B -2.5615
12 E B -3.4436
13 A B -2.6551
14 K B -3.1689
15 A B -2.2705
16 K B -2.6045
1 A C -2.0910
2 E C -2.8888
3 A C -2.6315
4 E C -3.6979
5 A C -2.8451
6 K C -3.6364
7 A C -3.0109
8 K C -3.3071
9 A C -4.0648
10 E C -4.0957
11 A C -3.2250
12 E C -4.0816
13 A C -4.2466
14 K C -3.4294
15 A C -2.5164
16 K C -3.3271
1 A D -1.9196
2 E D -3.2202
3 A D -2.5560
4 E D -3.5393
5 A D -3.8114
6 K D -4.1552
7 A D -3.6750
8 K D -3.8071
9 A D -3.9468
10 E D -4.2839
11 A D -4.1588
12 E D -3.6658
13 A D -2.9782
14 K D -4.1496
15 A D -3.7753
16 K D -2.9325
1 A E -1.7634
2 E E -3.5321
3 A E -3.3211
4 E E -3.8957
5 A E -3.2724
6 K E -3.9508
7 A E -3.8826
8 K E -3.7717
9 A E -3.5129
10 E E -4.0110
11 A E -3.4631
12 E E -3.4172
13 A E -3.2718
14 K E -3.2801
15 A E -2.5241
16 K E -2.7363
1 A F -1.7673
2 E F -3.1811
3 A F -2.7987
4 E F -3.5898
5 A F -3.0645
6 K F -3.7299
7 A F -3.3424
8 K F -3.7769
9 A F -3.3928
10 E F -3.9890
11 A F -3.5401
12 E F -3.8838
13 A F -3.0864
14 K F -3.2333
15 A F -2.4594
16 K F -2.8549
1 A G -1.4224
2 E G -2.8415
3 A G -2.3186
4 E G -2.9705
5 A G -2.5300
6 K G -3.3191
7 A G -3.3890
8 K G -3.5199
9 A G -3.1762
10 E G -3.7505
11 A G -3.3415
12 E G -3.6886
13 A G -3.0004
14 K G -3.1922
15 A G -2.4420
16 K G -2.6402
1 A H -1.5012
2 E H -2.7817
3 A H -2.1521
4 E H -2.6269
5 A H 0.0000
6 K H -3.6084
7 A H -3.1169
8 K H -3.4411
9 A H -3.4055
10 E H -3.7145
11 A H -3.2679
12 E H -3.7438
13 A H -3.1033
14 K H -3.2529
15 A H -2.4880
16 K H -2.6744
1 A I -1.7629
2 E I -3.0174
3 A I -2.4405
4 E I -3.3527
5 A I -3.2944
6 K I -3.5337
7 A I -3.0703
8 K I -3.6441
9 A I -3.7578
10 E I -3.7225
11 A I -3.0098
12 E I -3.6378
13 A I -3.3940
14 K I -3.1532
15 A I -2.4128
16 K I -2.6770
1 A J -0.9354
2 E J -2.1763
3 A J -2.5259
4 E J -2.9321
5 A J -1.9210
6 K J -2.3471
7 A J 0.0000
8 K J -3.2434
9 A J -2.3405
10 E J -2.9249
11 A J -3.1542
12 E J -3.4963
13 A J -2.6064
14 K J -2.9411
15 A J -2.4925
16 K J -2.7529
1 A K -1.6896
2 E K -2.8539
3 A K -3.0891
4 E K -3.5971
5 A K -2.7069
6 K K -2.9359
7 A K 0.0000
8 K K -3.7562
9 A K -2.8313
10 E K -2.8991
11 A K 0.0000
12 E K -3.6686
13 A K -2.8774
14 K K -3.2753
15 A K -2.9291
16 K K -2.6905
1 A L -1.9517
2 E L -3.3801
3 A L -2.6617
4 E L -3.4657
5 A L -3.5156
6 K L -3.8097
7 A L 0.0000
8 K L -4.2732
9 A L -3.8759
10 E L -3.9474
11 A L 0.0000
12 E L -4.3686
13 A L -3.6921
14 K L -3.7236
15 A L -3.3559
16 K L -2.7902
1 A M -2.1235
2 E M -3.0771
3 A M -1.9820
4 E M -2.7255
5 A M -3.2314
6 K M -3.8663
7 A M -3.0823
8 K M -3.9646
9 A M 0.0000
10 E M -4.0102
11 A M -3.1237
12 E M -3.8277
13 A M -3.6193
14 K M -3.2424
15 A M -2.4011
16 K M -2.7806
1 A N -1.3995
2 E N -2.5833
3 A N -2.8425
4 E N -3.4635
5 A N -2.8153
6 K N -3.6660
7 A N 0.0000
8 K N -3.9151
9 A N -2.6789
10 E N -2.9192
11 A N 0.0000
12 E N -4.4955
13 A N -2.6799
14 K N -3.9788
15 A N -4.0152
16 K N -3.2190
1 A O -2.0604
2 E O -3.6917
3 A O -3.5883
4 E O -4.5272
5 A O 0.0000
6 K O -4.2697
7 A O 0.0000
8 K O -3.4271
9 A O 0.0000
10 E O -3.6279
11 A O -3.2506
12 E O -3.8863
13 A O 0.0000
14 K O -3.7503
15 A O -2.5180
16 K O -3.4229
1 A P -3.6167
2 E P -4.2857
3 A P -2.8975
4 E P -4.0723
5 A P 0.0000
6 K P -4.0314
7 A P -3.2274
8 K P -4.0600
9 A P -3.6505
10 E P -3.5950
11 A P -3.0371
12 E P -3.4156
13 A P -2.7438
14 K P -3.2202
15 A P -2.2904
16 K P -2.5384
1 A Q -1.1732
2 E Q -2.6080
3 A Q -2.0453
4 E Q -2.4463
5 A Q -2.5237
6 K Q -3.5543
7 A Q 0.0000
8 K Q -3.9226
9 A Q -3.3996
10 E Q -3.9373
11 A Q -4.0607
12 E Q -3.8173
13 A Q -2.8444
14 K Q -3.2881
15 A Q -2.7803
16 K Q -2.6997
1 A R -1.0701
2 E R -2.2538
3 A R -2.0757
4 E R -2.6465
5 A R -2.9361
6 K R -3.6931
7 A R 0.0000
8 K R -4.2759
9 A R 0.0000
10 E R -3.7394
11 A R 0.0000
12 E R -4.4774
13 A R -3.1450
14 K R -4.1603
15 A R -3.6986
16 K R -3.0118
1 A S -0.6793
2 E S -1.8081
3 A S -1.4914
4 E S -2.2369
5 A S -2.4337
6 K S -3.1805
7 A S 0.0000
8 K S -3.5391
9 A S 0.0000
10 E S -3.7935
11 A S -3.2238
12 E S -4.1860
13 A S 0.0000
14 K S -3.5968
15 A S -2.5045
16 K S -3.4084
1 A T -1.5057
2 E T -2.4934
3 A T -2.2072
4 E T -2.9907
5 A T -2.7849
6 K T -2.9096
7 A T -3.0702
8 K T -3.3479
9 A T -2.9043
10 E T -2.9829
11 A T 0.0000
12 E T -3.5204
13 A T -2.7422
14 K T -3.9234
15 A T -3.2810
16 K T -2.8084
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018