Project name: DHFR [mutate: GR121A, CA85A, IA61A] [mutate: GA43A, GR96A, RA33A, MR20A, FA137A]

Status: done

Started: 2025-07-15 15:48:37
Settings
Chain sequence(s) A: MMISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLDKPVIMGRHTWESSIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKKAQKKLYLTHIDDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCCFEILERR
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues RA33A,MR20A,GR96A,FA137A,GA43A
Energy difference between WT (input) and mutated protein (by FoldX) 8.43788 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:03:07)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:03:55)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:55)
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:02:43)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:03:44)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:56)
Show buried residues

Minimal score value
-2.1876
Maximal score value
1.7419
Average score
-0.4348
Total score value
-69.1393

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7532
2 I A 0.3507
3 S A 0.0000
4 L A 0.0000
5 I A 0.0000
6 A A 0.0000
7 A A 0.0000
8 L A 0.0000
9 A A 0.0000
10 V A 0.2206
11 D A -1.7826
12 R A -0.8286
13 V A 0.0000
14 I A 0.0000
15 G A 0.0000
16 M A -0.1637
17 E A -1.9245
18 N A -1.0853
19 A A -0.2896
20 R A -1.0770 mutated: MR20A
21 P A -0.2389
22 W A -0.1228
23 N A -1.2506
24 L A 0.0000
25 P A -0.1333
26 A A -0.0110
27 D A 0.0000
28 L A 1.5882
29 A A 0.3695
30 W A 0.2503
31 F A 0.2431
32 K A -1.2288
33 A A -0.2093 mutated: RA33A
34 N A -0.1715
35 T A 0.0000
36 L A 0.2568
37 D A -1.7479
38 K A -0.6681
39 P A 0.0000
40 V A 0.0000
41 I A 0.0000
42 M A 0.0000
43 A A -0.0788 mutated: GA43A
44 R A -0.7410
45 H A -1.0924
46 T A 0.0000
47 W A 0.0000
48 E A -1.8836
49 S A -0.2863
50 I A 0.6038
51 G A -0.8633
52 R A -1.9361
53 P A -0.3306
54 L A 0.1696
55 P A -0.2996
56 G A -0.5501
57 R A -0.5236
58 K A -1.2946
59 N A 0.0000
60 I A 0.0000
61 I A 0.0000
62 L A 0.1581
63 S A -0.0310
64 S A -0.4370
65 Q A -1.2847
66 P A -0.5355
67 G A -0.3732
68 T A -0.1901
69 D A -0.6770
70 D A -2.1876
71 R A -2.1707
72 V A 0.0000
73 T A 0.0147
74 W A 0.1898
75 V A 0.0000
76 K A -1.7167
77 S A -0.3484
78 V A -0.0830
79 D A -1.8780
80 E A -1.0573
81 A A 0.0000
82 I A 0.5635
83 A A 0.0880
84 A A 0.0236
85 C A 0.0000
86 G A -0.7992
87 D A -1.7513
88 V A 0.2940
89 P A -0.1657
90 E A -0.2291
91 I A 0.0000
92 M A 0.0000
93 V A 0.0000
94 I A 0.0000
95 G A 0.0000
96 R A -0.2533 mutated: GR96A
97 G A 0.0000
98 R A -1.8441
99 V A 0.0000
100 Y A 0.0000
101 E A -1.9079
102 Q A -0.8133
103 F A 0.0000
104 L A 0.1264
105 P A -0.4442
106 K A -1.2520
107 A A 0.0000
108 Q A -0.8499
109 K A -0.4950
110 L A 0.0000
111 Y A 0.0000
112 L A 0.0000
113 T A 0.0000
114 H A -0.3420
115 I A 0.0000
116 D A -1.7894
117 A A 0.0000
118 E A -1.7750
119 V A -0.4394
120 E A -1.8118
121 G A -0.8547
122 D A -1.8298
123 T A -0.4548
124 H A -0.6094
125 F A 0.0000
126 P A -0.3565
127 D A -1.7538
128 Y A -0.4340
129 E A -1.8262
130 P A -0.9037
131 D A -2.0196
132 D A -1.3288
133 W A 0.0000
134 E A -1.2481
135 S A -0.0909
136 V A 1.7419
137 A A 0.3077 mutated: FA137A
138 S A -0.5766
139 E A -1.4746
140 F A 1.5744
141 H A -0.2807
142 D A -1.8424
143 A A -0.6567
144 D A -1.7710
145 A A -0.4853
146 Q A -1.1877
147 N A 0.0000
148 S A -0.2684
149 H A -0.3475
150 S A -0.3332
151 Y A 0.0000
152 C A 0.4090
153 F A 0.0000
154 E A -0.2244
155 I A 0.2313
156 L A 0.0000
157 E A -0.8310
158 R A -0.9913
159 R A -1.9401
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Laboratory of Theory of Biopolymers 2018