| Chain sequence(s) |
A: GGGGSGGGGSGGGGS
C: GGGGSGGGGSGGGGS B: GGGGSGGGGSGGGGS E: GGGGSGGGGSGGGGS D: GGGGSGGGGSGGGGS G: GGGGSGGGGSGGGGS F: GGGGSGGGGSGGGGS I: GGGGSGGGGSGGGGS H: GGGGSGGGGSGGGGS K: GGGGSGGGGSGGGGS J: GGGGSGGGGSGGGGS L: GGGGSGGGGSGGGGS input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:05)
[INFO] Main: Simulation completed successfully. (00:00:08)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.5861 | |
| 2 | G | A | -1.5660 | |
| 3 | G | A | -1.1408 | |
| 4 | G | A | -0.8497 | |
| 5 | S | A | -0.7016 | |
| 6 | G | A | -0.7824 | |
| 7 | G | A | -0.8399 | |
| 8 | G | A | -0.7791 | |
| 9 | G | A | -0.7008 | |
| 10 | S | A | -0.6311 | |
| 11 | G | A | -0.7003 | |
| 12 | G | A | -0.8126 | |
| 13 | G | A | 0.0000 | |
| 14 | G | A | -1.0195 | |
| 15 | S | A | -0.9172 | |
| 1 | G | B | -1.4686 | |
| 2 | G | B | -1.5698 | |
| 3 | G | B | 0.0000 | |
| 4 | G | B | -0.8948 | |
| 5 | S | B | 0.0000 | |
| 6 | G | B | -0.8597 | |
| 7 | G | B | -1.0917 | |
| 8 | G | B | 0.0000 | |
| 9 | G | B | -0.8773 | |
| 10 | S | B | 0.0000 | |
| 11 | G | B | -0.8197 | |
| 12 | G | B | -0.8796 | |
| 13 | G | B | 0.0000 | |
| 14 | G | B | 0.0000 | |
| 15 | S | B | -1.1845 | |
| 1 | G | C | -1.1587 | |
| 2 | G | C | -1.2452 | |
| 3 | G | C | -1.2753 | |
| 4 | G | C | -0.8108 | |
| 5 | S | C | -0.8617 | |
| 6 | G | C | -0.9229 | |
| 7 | G | C | -1.0370 | |
| 8 | G | C | -1.2191 | |
| 9 | G | C | -0.9189 | |
| 10 | S | C | -0.8255 | |
| 11 | G | C | -0.9401 | |
| 12 | G | C | -0.9395 | |
| 13 | G | C | -1.2974 | |
| 14 | G | C | -1.4741 | |
| 15 | S | C | -1.1029 | |
| 1 | G | D | -1.4160 | |
| 2 | G | D | -1.3268 | |
| 3 | G | D | -1.4260 | |
| 4 | G | D | 0.0000 | |
| 5 | S | D | -1.0564 | |
| 6 | G | D | -1.1165 | |
| 7 | G | D | -1.1842 | |
| 8 | G | D | -1.3352 | |
| 9 | G | D | -1.2397 | |
| 10 | S | D | -1.0764 | |
| 11 | G | D | -1.1712 | |
| 12 | G | D | 0.0000 | |
| 13 | G | D | -1.4917 | |
| 14 | G | D | -1.5798 | |
| 15 | S | D | -1.1745 | |
| 1 | G | E | -1.2600 | |
| 2 | G | E | -1.2447 | |
| 3 | G | E | -1.3738 | |
| 4 | G | E | -1.2336 | |
| 5 | S | E | -0.9302 | |
| 6 | G | E | -1.1629 | |
| 7 | G | E | -1.1214 | |
| 8 | G | E | -1.1949 | |
| 9 | G | E | -1.1750 | |
| 10 | S | E | -0.9106 | |
| 11 | G | E | -1.1785 | |
| 12 | G | E | -1.1060 | |
| 13 | G | E | -1.2501 | |
| 14 | G | E | -1.3868 | |
| 15 | S | E | -0.8851 | |
| 1 | G | F | -1.5830 | |
| 2 | G | F | -1.4592 | |
| 3 | G | F | -1.4845 | |
| 4 | G | F | 0.0000 | |
| 5 | S | F | -0.9193 | |
| 6 | G | F | 0.0000 | |
| 7 | G | F | -1.0616 | |
| 8 | G | F | -1.2461 | |
| 9 | G | F | 0.0000 | |
| 10 | S | F | -0.8984 | |
| 11 | G | F | -0.9496 | |
| 12 | G | F | 0.0000 | |
| 13 | G | F | -1.1603 | |
| 14 | G | F | 0.0000 | |
| 15 | S | F | -1.0933 | |
| 1 | G | G | -1.5259 | |
| 2 | G | G | -1.2345 | |
| 3 | G | G | -1.2486 | |
| 4 | G | G | 0.0000 | |
| 5 | S | G | -0.6143 | |
| 6 | G | G | -0.7107 | |
| 7 | G | G | -0.7415 | |
| 8 | G | G | -0.9555 | |
| 9 | G | G | 0.0000 | |
| 10 | S | G | -0.5741 | |
| 11 | G | G | -0.6892 | |
| 12 | G | G | 0.0000 | |
| 13 | G | G | -0.8989 | |
| 14 | G | G | -1.0850 | |
| 15 | S | G | -0.8767 | |
| 1 | G | H | -1.7572 | |
| 2 | G | H | -1.5378 | |
| 3 | G | H | -1.3000 | |
| 4 | G | H | 0.0000 | |
| 5 | S | H | -0.6308 | |
| 6 | G | H | 0.0000 | |
| 7 | G | H | -0.8359 | |
| 8 | G | H | -0.8401 | |
| 9 | G | H | 0.0000 | |
| 10 | S | H | -0.5708 | |
| 11 | G | H | -0.7470 | |
| 12 | G | H | 0.0000 | |
| 13 | G | H | -0.9001 | |
| 14 | G | H | -0.9985 | |
| 15 | S | H | -0.8651 | |
| 1 | G | I | -1.8533 | |
| 2 | G | I | -1.6824 | |
| 3 | G | I | -1.6076 | |
| 4 | G | I | 0.0000 | |
| 5 | S | I | -0.9554 | |
| 6 | G | I | -1.0734 | |
| 7 | G | I | -1.1064 | |
| 8 | G | I | -1.1842 | |
| 9 | G | I | 0.0000 | |
| 10 | S | I | -0.9200 | |
| 11 | G | I | -1.0878 | |
| 12 | G | I | -1.1580 | |
| 13 | G | I | -1.1927 | |
| 14 | G | I | 0.0000 | |
| 15 | S | I | -0.8601 | |
| 1 | G | J | -1.4995 | |
| 2 | G | J | -1.5708 | |
| 3 | G | J | -1.6418 | |
| 4 | G | J | -1.1250 | |
| 5 | S | J | -1.0089 | |
| 6 | G | J | -1.0307 | |
| 7 | G | J | -1.2112 | |
| 8 | G | J | -1.3218 | |
| 9 | G | J | -1.0801 | |
| 10 | S | J | -1.0598 | |
| 11 | G | J | -1.1520 | |
| 12 | G | J | -1.2023 | |
| 13 | G | J | -1.3505 | |
| 14 | G | J | -1.0440 | |
| 15 | S | J | -0.6972 | |
| 1 | G | K | -1.6118 | |
| 2 | G | K | -1.9110 | |
| 3 | G | K | -1.5609 | |
| 4 | G | K | -1.2462 | |
| 5 | S | K | -1.1025 | |
| 6 | G | K | -1.0756 | |
| 7 | G | K | -1.2962 | |
| 8 | G | K | -1.1397 | |
| 9 | G | K | -1.1663 | |
| 10 | S | K | -1.0811 | |
| 11 | G | K | -1.1273 | |
| 12 | G | K | -1.3311 | |
| 13 | G | K | -1.3232 | |
| 14 | G | K | -1.0826 | |
| 15 | S | K | -0.8207 | |
| 1 | G | L | -1.7523 | |
| 2 | G | L | -1.8373 | |
| 3 | G | L | -1.2859 | |
| 4 | G | L | -1.0597 | |
| 5 | S | L | -0.8941 | |
| 6 | G | L | -0.9825 | |
| 7 | G | L | -1.0666 | |
| 8 | G | L | -0.8712 | |
| 9 | G | L | -0.9572 | |
| 10 | S | L | 0.0000 | |
| 11 | G | L | -0.8774 | |
| 12 | G | L | -1.1516 | |
| 13 | G | L | 0.0000 | |
| 14 | G | L | -1.0481 | |
| 15 | S | L | -0.9096 |