Project name: query_structure

Status: done

Started: 2026-03-17 00:46:57
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Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYEDSMFWYRQAPGKEREWVAAIYSYGNSTAYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDHGAFWWNYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:30)
Show buried residues

Minimal score value
-3.977
Maximal score value
2.2744
Average score
-0.8044
Total score value
-96.5272

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5184
2 V A -0.8816
3 Q A -0.9675
4 L A 0.0000
5 V A 1.0738
6 E A 0.0000
7 S A -0.5979
8 G A -1.0701
9 G A -0.8410
10 G A -0.0534
11 L A 1.0027
12 V A -0.0299
13 Q A -1.2524
14 A A -1.5096
15 G A -1.4407
16 G A -0.9917
17 S A -1.4232
18 L A -1.0807
19 R A -2.3480
20 L A 0.0000
21 S A -0.4937
22 C A 0.0000
23 A A -0.1191
24 A A 0.0000
25 S A -0.7387
26 G A -1.0722
27 F A -0.5461
28 P A -0.8051
29 V A 0.0000
30 Y A -0.1886
31 E A -0.8871
32 D A -0.9039
33 S A 0.0000
34 M A 0.0000
35 F A 0.0000
36 W A 0.0000
37 Y A -0.8876
38 R A -1.7460
39 Q A -2.5754
40 A A -2.2804
41 P A -1.4859
42 G A -1.9990
43 K A -3.5950
44 E A -3.9770
45 R A -3.5581
46 E A -3.0115
47 W A -1.2174
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 Y A -0.1180
53 S A -0.3138
54 Y A 0.5904
55 G A -0.3656
56 N A -0.8686
57 S A -0.4879
58 T A -0.2486
59 A A -0.2665
60 Y A -0.7983
61 A A -1.4635
62 D A -2.4432
63 S A -1.8072
64 V A 0.0000
65 K A -2.6337
66 G A -1.8664
67 R A -1.7561
68 F A 0.0000
69 T A -1.0774
70 I A 0.0000
71 S A -0.7044
72 R A -1.2199
73 D A -1.8986
74 N A -2.1524
75 A A -1.6624
76 K A -2.4637
77 N A -1.7834
78 T A -1.0779
79 V A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.6841
83 M A 0.0000
84 N A -1.9750
85 S A -1.4402
86 L A 0.0000
87 K A -2.5668
88 P A -1.9949
89 E A -2.4138
90 D A 0.0000
91 T A -1.0261
92 A A 0.0000
93 V A -0.7310
94 Y A 0.0000
95 Y A -0.3628
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -1.7576
100 D A -1.8781
101 H A -1.8057
102 G A -0.8003
103 A A 0.8371
104 F A 2.2744
105 W A 2.2007
106 W A 0.9606
107 N A -0.9637
108 Y A -0.5701
109 D A -1.7518
110 Y A -0.7480
111 W A -0.1254
112 G A -0.0545
113 Q A -0.9224
114 G A 0.0000
115 T A 0.0000
116 Q A -1.2051
117 V A 0.0000
118 T A -0.3389
119 V A 0.0000
120 S A -0.7792
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Laboratory of Theory of Biopolymers 2018