| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYEDSMFWYRQAPGKEREWVAAIYSYGNSTAYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDHGAFWWNYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:30)
[INFO] Main: Simulation completed successfully. (00:01:30)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5184 | |
| 2 | V | A | -0.8816 | |
| 3 | Q | A | -0.9675 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.0738 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5979 | |
| 8 | G | A | -1.0701 | |
| 9 | G | A | -0.8410 | |
| 10 | G | A | -0.0534 | |
| 11 | L | A | 1.0027 | |
| 12 | V | A | -0.0299 | |
| 13 | Q | A | -1.2524 | |
| 14 | A | A | -1.5096 | |
| 15 | G | A | -1.4407 | |
| 16 | G | A | -0.9917 | |
| 17 | S | A | -1.4232 | |
| 18 | L | A | -1.0807 | |
| 19 | R | A | -2.3480 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4937 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1191 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7387 | |
| 26 | G | A | -1.0722 | |
| 27 | F | A | -0.5461 | |
| 28 | P | A | -0.8051 | |
| 29 | V | A | 0.0000 | |
| 30 | Y | A | -0.1886 | |
| 31 | E | A | -0.8871 | |
| 32 | D | A | -0.9039 | |
| 33 | S | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | F | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.8876 | |
| 38 | R | A | -1.7460 | |
| 39 | Q | A | -2.5754 | |
| 40 | A | A | -2.2804 | |
| 41 | P | A | -1.4859 | |
| 42 | G | A | -1.9990 | |
| 43 | K | A | -3.5950 | |
| 44 | E | A | -3.9770 | |
| 45 | R | A | -3.5581 | |
| 46 | E | A | -3.0115 | |
| 47 | W | A | -1.2174 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | Y | A | -0.1180 | |
| 53 | S | A | -0.3138 | |
| 54 | Y | A | 0.5904 | |
| 55 | G | A | -0.3656 | |
| 56 | N | A | -0.8686 | |
| 57 | S | A | -0.4879 | |
| 58 | T | A | -0.2486 | |
| 59 | A | A | -0.2665 | |
| 60 | Y | A | -0.7983 | |
| 61 | A | A | -1.4635 | |
| 62 | D | A | -2.4432 | |
| 63 | S | A | -1.8072 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.6337 | |
| 66 | G | A | -1.8664 | |
| 67 | R | A | -1.7561 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.0774 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.7044 | |
| 72 | R | A | -1.2199 | |
| 73 | D | A | -1.8986 | |
| 74 | N | A | -2.1524 | |
| 75 | A | A | -1.6624 | |
| 76 | K | A | -2.4637 | |
| 77 | N | A | -1.7834 | |
| 78 | T | A | -1.0779 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.6841 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.9750 | |
| 85 | S | A | -1.4402 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.5668 | |
| 88 | P | A | -1.9949 | |
| 89 | E | A | -2.4138 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0261 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7310 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.3628 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.7576 | |
| 100 | D | A | -1.8781 | |
| 101 | H | A | -1.8057 | |
| 102 | G | A | -0.8003 | |
| 103 | A | A | 0.8371 | |
| 104 | F | A | 2.2744 | |
| 105 | W | A | 2.2007 | |
| 106 | W | A | 0.9606 | |
| 107 | N | A | -0.9637 | |
| 108 | Y | A | -0.5701 | |
| 109 | D | A | -1.7518 | |
| 110 | Y | A | -0.7480 | |
| 111 | W | A | -0.1254 | |
| 112 | G | A | -0.0545 | |
| 113 | Q | A | -0.9224 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.2051 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3389 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7792 |