Project name: 2FB4

Status: done

Started: 2026-03-23 10:53:57
Settings
Chain sequence(s) H: EVQLVQSGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARDGGHGFCSSASCFGPDYWGQGTPVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
L: QSVLTQPPSASGTPGQRVTISCSGTSSNIGSSTVNWYQQLPGMAPKLLIYRDAMRPSGVPDRFSGSKSGASASLAIGGLQSEDETDYYCAAWDVSLNAYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:36)
Show buried residues

Minimal score value
-3.3019
Maximal score value
1.8246
Average score
-0.7149
Total score value
-318.1256

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q L -1.0702
2 S L -0.3478
3 V L 0.8329
4 L L 0.0000
5 T L 0.0357
6 Q L 0.0000
7 P L -0.5014
8 P L -0.6815
9 S L -0.7585
10 A L -0.4869
11 S L -0.5346
12 G L 0.0000
13 T L -0.8593
14 P L -1.2633
15 G L -1.7535
16 Q L -2.2938
17 R L -2.6855
18 V L 0.0000
19 T L -0.7355
20 I L 0.0000
21 S L -0.4544
22 C L 0.0000
23 S L -0.3285
24 G L -0.4084
25 T L -0.4721
26 S L -0.5343
27 S L -0.3595
27A N L 0.0000
27B I L 0.0000
28 G L -0.8174
29 S L -0.4161
30 S L -0.4088
31 T L -0.7394
32 V L 0.0000
33 N L 0.0000
34 W L 0.0000
35 Y L 0.0000
36 Q L -0.6936
37 Q L 0.0000
38 L L 0.7085
39 P L 0.0402
40 G L -0.0491
41 M L 0.7303
42 A L -0.0398
43 P L 0.0000
44 K L -1.3620
45 L L 0.0000
46 L L 0.0000
47 I L 0.0000
48 Y L -0.6014
49 R L -1.3940
50 D L -1.1700
51 A L -0.6123
52 M L -0.3135
53 R L -1.3826
54 P L -0.6449
55 S L -0.8685
56 G L -0.9976
57 V L 0.0000
58 P L -1.4263
59 D L -2.2941
60 R L -1.6376
61 F L 0.0000
62 S L -0.8389
63 G L -0.6366
64 S L -0.8166
65 K L -1.2560
66 S L -0.9200
67 G L -0.9557
68 A L -0.7959
69 S L -0.8183
70 A L 0.0000
71 S L -0.5399
72 L L 0.0000
73 A L -0.6801
74 I L 0.0000
75 G L -1.8343
76 G L -1.7018
77 L L 0.0000
78 Q L -2.1092
79 S L -1.6160
80 E L -2.3192
81 D L 0.0000
82 E L -1.2990
83 T L -0.7097
84 D L -0.5537
85 Y L 0.0000
86 Y L 0.0000
87 C L 0.0000
88 A L 0.0000
89 A L 0.0000
90 W L 0.0000
91 D L 0.0000
92 V L 0.2130
93 S L -0.0261
94 L L 0.0568
95 N L -0.4253
96 A L -0.4190
97 Y L 0.0000
98 V L 0.0000
99 F L 0.0000
100 G L 0.0000
101 T L -0.2583
102 G L -0.7296
103 T L 0.0000
104 K L -1.1252
105 V L 0.0000
106 T L -0.4737
107 V L 0.0000
108 L L 0.1419
109 G L -0.7817
110 Q L -1.3388
111 P L -1.5504
112 K L -2.6717
113 A L -2.0436
114 N L -2.1263
115 P L 0.0000
116 T L -0.5300
117 V L 0.0000
118 T L -0.3058
119 L L -0.2738
120 F L 0.0000
121 P L -0.1489
122 P L 0.0000
123 S L 0.0000
124 S L -1.4882
125 E L -2.0699
126 E L 0.0000
127 L L -1.9710
128 Q L -2.3028
129 A L -1.8857
130 N L -2.7254
131 K L -2.6454
132 A L 0.0000
133 T L 0.0000
134 L L 0.0000
135 V L 0.0000
136 C L 0.0000
137 L L 0.0000
138 I L 0.0000
139 S L -0.9263
140 D L -1.8496
141 F L 0.0000
142 Y L -1.8863
143 P L -1.5692
144 G L -1.2110
145 A L -0.3882
146 V L -0.2589
147 T L -0.0575
148 V L 0.1196
149 A L -0.3756
150 W L 0.0000
151 K L -1.4231
152 A L 0.0000
153 D L -1.9832
154 G L -1.3981
155 S L -1.1408
156 P L -1.0719
157 V L -0.9280
158 K L -1.6136
159 A L -0.7315
160 G L -0.3779
161 V L 0.0947
162 E L -0.2111
163 T L -0.2764
164 T L -0.7643
165 K L -1.9161
166 P L -1.3389
167 S L -1.6546
168 K L -2.8022
169 Q L -2.2524
170 S L -1.6702
171 N L -2.2928
172 N L -2.7468
173 K L -2.5629
174 Y L -1.8249
175 A L 0.0000
176 A L 0.0000
177 S L 0.0000
178 S L 0.0000
179 Y L 0.0000
180 L L 0.0000
181 S L -0.5645
182 L L 0.0000
183 T L -2.0197
184 P L -2.5734
185 E L -3.3019
186 Q L -2.5904
187 W L 0.0000
188 K L -3.0846
189 S L -2.5104
190 H L -2.5558
191 R L -2.6413
192 S L -1.7047
193 Y L 0.0000
194 S L 0.0000
195 C L 0.0000
196 Q L -1.2156
197 V L 0.0000
198 T L -0.8929
199 H L 0.0000
200 E L -2.5076
201 G L -1.4208
202 S L -1.0975
203 T L -0.9773
204 V L -1.0240
205 E L -2.1846
206 K L -1.5513
207 T L -0.8954
208 V L -0.5667
209 A L -1.0856
210 P L -1.2105
211 T L -0.9476
212 E L -1.1617
213 C L 0.0420
214 S L -0.1958
1 E H -2.1265
2 V H -1.1189
3 Q H -1.4125
4 L H 0.0000
5 V H 0.7822
6 Q H 0.0000
7 S H -0.5221
8 G H -1.1144
9 G H -0.6299
10 G H 0.0160
11 V H 0.7469
12 V H -0.2880
13 Q H -1.1457
14 P H -2.0159
15 G H -2.1916
16 R H -2.5596
17 S H -2.0378
18 L H -1.3161
19 R H -2.0008
20 L H 0.0000
21 S H -0.3768
22 C H 0.0000
23 S H -0.3781
24 S H -0.4049
25 S H -0.6634
26 G H -0.9277
27 F H 0.4374
28 I H 1.8246
29 F H 0.0000
30 S H -0.7094
31 S H -0.0848
32 Y H 0.0583
33 A H 0.0000
34 M H 0.0000
35 Y H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H 0.0000
40 A H -1.3278
41 P H -1.1032
42 G H -1.5240
43 K H -2.2805
44 G H -1.4618
45 L H 0.0000
46 E H -1.1205
47 W H 0.0000
48 V H 0.0000
49 A H 0.0000
50 I H 0.0000
51 I H 0.0000
52 W H -0.8749
53 D H -1.5093
54 D H -2.3391
55 G H -1.6748
56 S H -1.4427
57 D H -1.4578
58 Q H -0.9346
59 H H -0.9734
60 Y H -1.1249
61 A H -1.5231
62 D H -2.5148
63 S H -1.8221
64 V H 0.0000
65 K H -2.6342
66 G H -1.8235
67 R H -1.6171
68 F H 0.0000
69 T H -0.8783
70 I H 0.0000
71 S H -0.6645
72 R H -1.2813
73 N H -1.8890
74 D H -2.0523
75 S H -1.7754
76 K H -2.5416
77 N H -1.7165
78 T H -1.1344
79 L H 0.0000
80 F H -0.3646
81 L H 0.0000
82 Q H -1.0693
83 M H 0.0000
84 D H -2.0978
85 S H -1.9992
86 L H 0.0000
87 R H -3.0795
88 P H -2.0262
89 E H -2.5017
90 D H 0.0000
91 T H -0.8520
92 G H 0.0000
93 V H 0.0047
94 Y H 0.0000
95 F H 0.0000
96 C H 0.0000
97 A H 0.0000
98 R H 0.0000
99 D H 0.0000
100 G H -0.0000
101 G H -0.2872
101A H H -0.7054
101B G H 0.0000
101C F H 0.5020
101D C H 0.0000
102 S H 0.0776
103 S H -0.2589
104 A H 0.0122
104A S H -0.2450
104B C H 0.0000
104C F H -0.1519
104D G H 0.0000
105 P H 0.0000
106 D H -0.0948
107 Y H -0.0580
108 W H -0.1726
109 G H 0.0000
110 Q H -0.7372
111 G H 0.0000
112 T H 0.0000
113 P H -0.3403
114 V H 0.0000
115 T H -0.1911
116 V H 0.0000
117 S H -0.6880
118 S H -0.6929
119 A H -0.4175
120 S H -0.5874
121 T H -0.8441
122 K H -1.8375
123 G H -1.7592
124 P H 0.0000
125 S H -0.4492
126 V H 0.0000
127 F H -0.6883
128 P H -1.0917
129 L H 0.0000
130 A H -0.9658
131 P H 0.0000
132 S H -1.2705
133 S H -1.2694
134 K H -1.9653
135 S H -1.3736
136 T H -0.9460
137 S H -0.6114
138 G H -0.9093
139 G H -0.9689
140 T H -0.6518
141 A H 0.0000
142 A H -0.0780
143 L H 0.0000
144 G H 0.0000
145 C H 0.0000
146 L H 0.0000
147 V H 0.0000
148 K H -0.3765
149 D H -0.6399
150 Y H 0.0000
151 F H 0.0000
152 P H 0.0000
153 Q H -0.5758
154 P H -0.8043
155 V H -0.6477
156 T H -0.5186
157 V H -0.3127
158 S H -0.3310
159 W H 0.0000
160 N H -0.8114
161 S H -0.6619
162 G H -0.4373
163 A H -0.2091
164 L H -0.0194
165 T H -0.1990
166 S H -0.3121
167 G H -0.4092
168 V H 0.0749
169 H H -0.2040
170 T H -0.0824
171 F H 0.0000
172 P H -0.1561
173 A H 0.2607
174 V H 0.0000
175 L H 1.2665
176 Q H 0.3586
177 S H -0.1034
178 S H -0.1798
179 G H 0.0267
180 L H -0.0491
181 Y H 0.2677
182 S H 0.0000
183 L H 0.0000
184 S H 0.0000
185 S H 0.0000
186 V H 0.0000
187 V H 0.0000
188 T H -0.2931
189 V H 0.0000
190 P H -0.6728
191 S H -0.6942
192 S H -0.6395
193 S H -0.6701
194 L H -0.8787
195 G H -1.2062
196 T H -0.8824
197 Q H -1.5796
198 T H -1.3474
199 Y H 0.0000
200 I H -1.4532
201 C H 0.0000
202 N H -1.5453
203 V H 0.0000
204 N H -1.8167
205 H H 0.0000
206 K H -2.7428
207 P H -1.6784
208 S H -1.9987
209 N H -2.6631
210 T H -2.1258
211 K H -2.6531
212 V H -1.8807
213 D H -2.6693
214 K H -2.1902
215 R H -2.7865
216 V H 0.0000
217 E H -2.7167
218 P H -1.3059
219 K H -1.1247
220 S H -0.4630
221 C H 0.3028
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018