Project name: A2K

Status: done

Started: 2026-07-20 05:02:55
Settings
Chain sequence(s) A: ASNPYVEPRGSGGSGKQSSRVPLY
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:10)
Show buried residues

Minimal score value
-2.006
Maximal score value
1.7403
Average score
-0.3358
Total score value
-8.0603

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 0.0199
2 S A -0.4347
3 N A -1.3577
4 P A -0.2448
5 Y A 1.5696
6 V A 1.5519
7 E A -1.5613
8 P A -0.9147
9 R A -1.9743
10 G A -0.8385
11 S A -0.3819
12 G A -0.5900
13 G A -0.5939
14 S A -0.3908
15 G A -0.8208
16 K A -2.0060
17 Q A -1.5485
18 S A -0.4707
19 S A -0.5882
20 R A -1.5630
21 V A 1.3947
22 P A 0.3459
23 L A 1.7403
24 Y A 1.5972
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Laboratory of Theory of Biopolymers 2018