Project name: ECD_857_1st

Status: done

Started: 2024-06-19 14:47:27
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLKLSVKLVEMLRDIMLRSGCTLEESKIKEVLEKPKYIDLALKAQFEVMPETALELAKVFRLKNIEALAILVCGCSPTGNLSNVLSLKMKGDPNLSWVMTTCSTECARKNMADLLEKYSRGIYDGDLKDKVPYKGIKISLELVKKPCTEGIELKSKRPQLLRKELKKLEERVEKLSEEVTRLSEENVGKSIMFAMTPKIEETSSLMPRLGFEKGLKISEEECLNGRCRRTVSVETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMRNQLKEGEERVEKLKEEEKKKL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:59)
Show buried residues

Minimal score value
-5.4803
Maximal score value
2.3684
Average score
-1.1489
Total score value
-346.9576

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.4553
2 F A 1.0346
3 T A 0.5559
4 L A 0.2037
5 P A -0.2002
6 P A -1.0540
7 N A -2.2241
8 F A 0.0000
9 G A -1.3522
10 K A -2.2899
11 R A -1.4784
12 P A -0.6872
13 T A -0.6643
14 D A 0.0000
15 L A 0.7891
16 K A -0.4364
17 L A 0.0000
18 S A 0.8900
19 V A 1.4788
20 K A -0.1603
21 L A 0.0000
22 V A 0.2541
23 E A -0.6062
24 M A 0.0000
25 L A 0.0000
26 R A -1.3622
27 D A 0.0000
28 I A -0.5908
29 M A 0.0000
30 L A -0.8493
31 R A -1.1503
32 S A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.3733
36 L A 0.0000
37 E A -2.1724
38 E A -2.9803
39 S A -2.6631
40 K A -2.7428
41 I A -2.4984
42 K A -3.6946
43 E A -3.7035
44 V A 0.0000
45 L A -1.7038
46 E A -3.0116
47 K A -2.6826
48 P A -1.6077
49 K A -1.5900
50 Y A -1.0323
51 I A -0.8901
52 D A -1.9581
53 L A 0.0000
54 A A 0.0000
55 L A -0.6202
56 K A -1.4020
57 A A 0.0000
58 Q A 0.0000
59 F A -0.8809
60 E A -2.1989
61 V A 0.0000
62 M A 0.0000
63 P A 0.0000
64 E A -2.5914
65 T A 0.0000
66 A A 0.0000
67 L A -1.3057
68 E A -2.3570
69 L A 0.0000
70 A A 0.0000
71 K A -1.9303
72 V A 0.1057
73 F A -1.1260
74 R A -2.4856
75 L A -1.8493
76 K A -2.5381
77 N A -1.9133
78 I A -0.4146
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A 0.1955
94 L A 0.7967
95 S A 0.0000
96 N A 0.0000
97 V A 1.9250
98 L A 0.0000
99 S A 0.0000
100 L A 0.5011
101 K A -1.0806
102 M A 0.0000
103 K A -2.0209
104 G A 0.0000
105 D A -1.3841
106 P A -0.2702
107 N A -1.1544
108 L A 0.0000
109 S A 0.0000
110 W A -0.2237
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A -0.2877
115 C A -0.3658
116 S A 0.0000
117 T A -1.2061
118 E A -2.2824
119 C A -1.3253
120 A A 0.0000
121 R A -2.4908
122 K A -2.8053
123 N A -2.0990
124 M A 0.0000
125 A A 0.0000
126 D A -2.5897
127 L A 0.0000
128 L A 0.0000
129 E A -2.6362
130 K A -2.6078
131 Y A 0.0000
132 S A 0.0000
133 R A -3.0125
134 G A -1.8626
135 I A -1.4089
136 Y A -1.9402
137 D A -2.6651
138 G A -2.6357
139 D A -3.5287
140 L A 0.0000
141 K A -3.4983
142 D A -3.0859
143 K A -2.1123
144 V A 0.0000
145 P A -1.1130
146 Y A -0.8075
147 K A -1.3471
148 G A -0.3256
149 I A 0.0000
150 K A -1.4628
151 I A -0.2829
152 S A 0.0000
153 L A 0.0000
154 E A -2.3817
155 L A -1.4631
156 V A 0.0000
157 K A -2.7107
158 K A -3.0170
159 P A -2.0980
160 C A -1.4822
161 T A -1.5676
162 E A -2.4915
163 G A 0.0000
164 I A -1.2122
165 E A -2.2856
166 L A -2.0231
167 K A -2.1071
168 S A -2.4558
169 K A -3.0358
170 R A -3.0828
171 P A -2.5716
172 Q A -2.3854
173 L A -1.6042
174 L A 0.0000
175 R A -3.3604
176 K A -3.4656
177 E A -3.0464
178 L A -3.1938
179 K A -4.6690
180 K A -4.7544
181 L A 0.0000
182 E A -4.5434
183 E A -5.1379
184 R A -4.5973
185 V A -3.8110
186 E A -4.6668
187 K A -4.4925
188 L A 0.0000
189 S A -2.9871
190 E A -3.7166
191 E A -3.6973
192 V A 0.0000
193 T A -2.6956
194 R A -3.7766
195 L A -2.9152
196 S A -2.3563
197 E A -3.7444
198 E A -3.4213
199 N A 0.0000
200 V A 0.0000
201 G A -2.2669
202 K A -1.5191
203 S A 0.3029
204 I A 0.6419
205 M A 1.6094
206 F A 2.3684
207 A A 1.2633
208 M A 0.0000
209 T A -0.2396
210 P A -1.2853
211 K A -2.0578
212 I A 0.0000
213 E A -2.4662
214 E A -2.3972
215 T A 0.0000
216 S A 0.0000
217 S A -1.4536
218 L A -0.4682
219 M A 0.0000
220 P A 0.0000
221 R A -1.4227
222 L A -0.5183
223 G A 0.0000
224 F A 0.0000
225 E A -1.7626
226 K A -1.7127
227 G A 0.0000
228 L A -1.8057
229 K A -2.9315
230 I A -2.1228
231 S A 0.0000
232 E A -3.0226
233 E A -2.8600
234 E A -2.0579
235 C A -1.2106
236 L A 0.0000
237 N A -2.3113
238 G A -2.3601
239 R A -2.9110
240 C A 0.0000
241 R A -2.1659
242 R A -1.5727
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 V A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.1925
255 L A 0.0000
256 C A 0.0000
257 S A 0.0000
258 T A 0.0000
259 I A 0.0000
260 L A 0.0000
261 N A 0.5247
262 V A 1.3093
263 A A 0.1803
264 F A 0.0000
265 P A -0.2148
266 P A -0.9079
267 E A -1.4435
268 V A 0.5436
269 I A 0.0000
270 G A 0.0000
271 P A 0.0000
272 L A 0.0000
273 F A 0.0000
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A -0.0106
278 L A -0.6810
279 Y A 0.0000
280 M A -0.6361
281 R A -1.8583
282 N A -1.7957
283 Q A 0.0000
284 L A -1.2600
285 K A -2.6156
286 E A 0.0000
287 G A 0.0000
288 E A -3.3419
289 E A -3.5114
290 R A -3.1404
291 V A 0.0000
292 E A -4.7184
293 K A -4.7112
294 L A -3.9021
295 K A -4.5168
296 E A -5.4803
297 E A -4.8577
298 E A -4.1472
299 K A -4.3296
300 K A -4.1267
301 K A -3.0709
302 L A -0.6363
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Laboratory of Theory of Biopolymers 2018