| Chain sequence(s) |
A: MADVQLVESGGGLVQAGGSLRLSCTASGLTISTYNIGWFRQAPGKEREFVGIIIRNGDTTYYADSVKGRFTISRDNAKNTVYLQMNSVKPADAAVYSCGATVRAGAAAEQYNSYIFRGQGTQVTV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:37)
[INFO] Main: Simulation completed successfully. (00:02:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | 0.6522 | |
| 2 | A | A | -0.4308 | |
| 3 | D | A | -1.6391 | |
| 4 | V | A | -0.8227 | |
| 5 | Q | A | -1.4608 | |
| 6 | L | A | 0.0000 | |
| 7 | V | A | 0.3265 | |
| 8 | E | A | 0.0000 | |
| 9 | S | A | -0.5486 | |
| 10 | G | A | -0.9974 | |
| 11 | G | A | -0.7892 | |
| 12 | G | A | 0.0833 | |
| 13 | L | A | 1.1844 | |
| 14 | V | A | 0.0000 | |
| 15 | Q | A | -1.0275 | |
| 16 | A | A | -1.0121 | |
| 17 | G | A | -1.2785 | |
| 18 | G | A | -1.0064 | |
| 19 | S | A | -1.3013 | |
| 20 | L | A | -1.0247 | |
| 21 | R | A | -2.1172 | |
| 22 | L | A | 0.0000 | |
| 23 | S | A | -0.4731 | |
| 24 | C | A | 0.0000 | |
| 25 | T | A | -0.2832 | |
| 26 | A | A | 0.0000 | |
| 27 | S | A | -0.6728 | |
| 28 | G | A | -0.6999 | |
| 29 | L | A | -0.3135 | |
| 30 | T | A | -0.4781 | |
| 31 | I | A | 0.0000 | |
| 32 | S | A | -1.3140 | |
| 33 | T | A | -0.4035 | |
| 34 | Y | A | 0.1035 | |
| 35 | N | A | 0.0000 | |
| 36 | I | A | 0.0000 | |
| 37 | G | A | 0.0000 | |
| 38 | W | A | 0.0000 | |
| 39 | F | A | 0.0000 | |
| 40 | R | A | -1.3532 | |
| 41 | Q | A | -2.2260 | |
| 42 | A | A | -1.7686 | |
| 43 | P | A | -1.4273 | |
| 44 | G | A | -1.9897 | |
| 45 | K | A | -3.3764 | |
| 46 | E | A | -3.5293 | |
| 47 | R | A | -2.5774 | |
| 48 | E | A | -2.0337 | |
| 49 | F | A | -1.2000 | |
| 50 | V | A | 0.0000 | |
| 51 | G | A | 0.0000 | |
| 52 | I | A | 0.0000 | |
| 53 | I | A | 0.0000 | |
| 54 | I | A | -1.1055 | |
| 55 | R | A | -2.2045 | |
| 56 | N | A | -2.6785 | |
| 57 | G | A | -2.2957 | |
| 58 | D | A | -2.4878 | |
| 59 | T | A | -1.1816 | |
| 60 | T | A | -0.1462 | |
| 61 | Y | A | 0.4547 | |
| 62 | Y | A | -0.4287 | |
| 63 | A | A | -1.1873 | |
| 64 | D | A | -2.3299 | |
| 65 | S | A | -1.5888 | |
| 66 | V | A | 0.0000 | |
| 67 | K | A | -2.4985 | |
| 68 | G | A | -1.7654 | |
| 69 | R | A | -1.4711 | |
| 70 | F | A | 0.0000 | |
| 71 | T | A | -0.7397 | |
| 72 | I | A | 0.0000 | |
| 73 | S | A | -0.7395 | |
| 74 | R | A | -1.5206 | |
| 75 | D | A | -1.9486 | |
| 76 | N | A | -2.4845 | |
| 77 | A | A | -1.7143 | |
| 78 | K | A | -2.4435 | |
| 79 | N | A | -1.8291 | |
| 80 | T | A | 0.0000 | |
| 81 | V | A | 0.0000 | |
| 82 | Y | A | -0.6506 | |
| 83 | L | A | 0.0000 | |
| 84 | Q | A | -1.1879 | |
| 85 | M | A | 0.0000 | |
| 86 | N | A | -1.4013 | |
| 87 | S | A | -1.2644 | |
| 88 | V | A | 0.0000 | |
| 89 | K | A | -1.6111 | |
| 90 | P | A | -0.8098 | |
| 91 | A | A | -0.3779 | |
| 92 | D | A | 0.0000 | |
| 93 | A | A | -0.1622 | |
| 94 | A | A | 0.0000 | |
| 95 | V | A | -0.5599 | |
| 96 | Y | A | 0.0000 | |
| 97 | S | A | -0.7901 | |
| 98 | C | A | 0.0000 | |
| 99 | G | A | 0.0000 | |
| 100 | A | A | 0.0000 | |
| 101 | T | A | 0.0000 | |
| 102 | V | A | 1.1048 | |
| 103 | R | A | -0.9448 | |
| 104 | A | A | -0.7219 | |
| 105 | G | A | -0.7684 | |
| 106 | A | A | -0.6184 | |
| 107 | A | A | -1.2413 | |
| 108 | A | A | 0.0000 | |
| 109 | E | A | -2.4480 | |
| 110 | Q | A | -2.1349 | |
| 111 | Y | A | -1.0119 | |
| 112 | N | A | -1.2218 | |
| 113 | S | A | -0.5379 | |
| 114 | Y | A | 0.4668 | |
| 115 | I | A | 1.8560 | |
| 116 | F | A | 0.5576 | |
| 117 | R | A | -1.3537 | |
| 118 | G | A | 0.0000 | |
| 119 | Q | A | -1.5308 | |
| 120 | G | A | 0.0000 | |
| 121 | T | A | 0.0000 | |
| 122 | Q | A | -1.1405 | |
| 123 | V | A | 0.0000 | |
| 124 | T | A | 0.2686 | |
| 125 | V | A | 0.3278 |