Project name: seed11

Status: done

Started: 2026-03-03 09:19:07
Settings
Chain sequence(s) A: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
B: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:13:07)
Show buried residues

Minimal score value
-3.9608
Maximal score value
1.5089
Average score
-0.7207
Total score value
-467.0459

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.1976
2 A A -0.6688
3 S A -0.5446
4 C A 0.1075
5 E A -0.8183
6 Y A 0.6772
7 S A 0.2747
8 A A 0.1808
9 S A 0.0595
10 H A 0.0000
11 K A -0.7710
12 Q A -1.0417
13 D A -1.2265
14 L A 0.0000
15 L A 0.6063
16 L A 0.6987
17 G A -0.0626
18 S A -0.1199
19 T A -0.2541
20 G A 0.0110
21 S A 0.0615
22 I A 0.0000
23 S A -0.1837
24 C A 0.0000
25 P A 0.0000
26 S A -0.0854
27 L A 0.0000
28 S A -0.0618
29 C A 0.2669
30 Q A -0.8128
31 S A -1.3424
32 D A -2.1439
33 A A -1.3527
34 Q A -1.7264
35 S A -1.4624
36 P A -0.9258
37 A A -0.8678
38 V A 0.0000
39 T A -0.1115
40 W A 0.0000
41 Y A 0.0000
42 K A -0.9690
43 N A -1.4424
44 G A -0.8830
45 K A -0.9899
46 L A 0.4033
47 L A 0.1652
48 S A 0.0733
49 V A 0.3599
50 E A -0.4487
51 R A -1.1551
52 S A 0.0000
53 N A 0.0000
54 R A -0.8162
55 I A 0.0000
56 V A 0.9784
57 V A 0.0000
58 D A -0.3775
59 E A 0.0000
60 V A 0.0000
61 Y A -0.1713
62 D A -0.5759
63 Y A -0.6358
64 H A -0.8834
65 Q A -1.5090
66 G A -1.1174
67 T A 0.0000
68 Y A 0.0000
69 V A 0.0000
70 C A 0.0000
71 D A 0.0000
72 Y A 0.0000
73 T A -0.2161
74 Q A -0.9577
75 S A -0.9920
76 D A -1.3473
77 T A -0.1095
78 V A 1.0781
79 S A 0.0552
80 S A -0.3606
81 W A -0.0426
82 T A 0.0752
83 V A 0.1719
84 R A 0.0000
85 A A 0.0000
86 V A 0.0000
87 V A 0.0000
88 Q A -0.8881
89 V A 0.0000
90 R A -1.4042
91 T A -0.2187
92 I A 0.8823
93 V A 1.4985
94 G A -0.1549
95 D A -2.3317
96 T A -2.4251
97 K A -3.7247
98 D A -3.9608
99 K A -3.5801
100 T A -2.0617
101 H A -1.5943
102 T A -0.8872
103 C A 0.3099
104 P A -0.0166
105 P A 0.1073
106 C A 0.4703
107 P A -0.3716
108 A A -0.5465
109 P A -1.0965
110 E A -2.0211
111 A A -1.0494
112 A A -0.7821
113 G A -0.9619
114 G A -0.7259
115 P A 0.0000
116 S A -0.2836
117 V A 0.0000
118 F A 0.0000
119 L A 0.0000
120 F A 0.0000
121 P A -0.2955
122 P A 0.0000
123 K A -1.1088
124 P A -0.7876
125 K A -0.6590
126 D A 0.0000
127 T A 0.0000
128 L A 0.0000
129 M A 0.5216
130 I A 1.5089
131 S A 0.4333
132 R A -0.3807
133 T A -0.0680
134 P A 0.0000
135 E A -0.4280
136 V A 0.0000
137 T A 0.0000
138 C A 0.0000
139 V A 0.0000
140 V A 0.0000
141 V A 0.0000
142 D A -0.9439
143 V A 0.0000
144 S A -1.9528
145 H A -2.5852
146 E A -2.9722
147 D A -2.6079
148 P A -2.6027
149 E A -3.1221
150 V A -1.9682
151 K A -2.2504
152 F A -1.2279
153 N A -1.1944
154 W A 0.0000
155 Y A -0.6107
156 V A -0.8281
157 D A -1.8891
158 G A -0.7788
159 V A 0.6483
160 E A -0.6245
161 V A -0.5476
162 H A -1.8909
163 N A -2.1916
164 A A -1.8446
165 K A -2.4701
166 T A -1.9906
167 K A -2.2121
168 P A -2.1283
169 R A -2.9444
170 E A -2.6561
171 E A -2.6586
172 Q A 0.0000
173 Y A 0.1435
174 N A -0.3823
175 S A -0.7402
176 T A -1.4025
177 Y A 0.0000
178 R A 0.0000
179 V A 0.0000
180 V A 0.0000
181 S A 0.0000
182 V A 0.0000
183 L A 0.0000
184 T A -0.4583
185 V A 0.0000
186 L A 0.5894
187 H A -0.0734
188 Q A -1.2433
189 D A -1.4970
190 W A 0.0000
191 L A -1.1167
192 N A -2.0750
193 G A -2.0355
194 K A -2.2529
195 E A -2.3349
196 Y A 0.0000
197 K A -1.6263
198 C A 0.0000
199 K A -1.5047
200 V A 0.0000
201 S A -1.4952
202 N A 0.0000
203 K A -2.5992
204 A A -1.4937
205 L A -0.6755
206 G A -0.6798
207 A A -0.4162
208 P A -0.9002
209 I A -0.6277
210 E A -1.8230
211 K A -1.0626
212 T A -0.9805
213 I A 0.0000
214 S A 0.0000
215 K A 0.0000
216 A A 0.0000
217 K A -1.9640
218 G A -1.8771
219 Q A -2.1520
220 P A -1.9205
221 R A -2.4336
222 E A -2.8026
223 P A 0.0000
224 Q A -1.4026
225 V A 0.0000
226 Y A 0.0000
227 T A -0.8305
228 L A 0.0000
229 P A -0.3612
230 P A 0.0000
231 S A 0.0000
232 R A -2.6327
233 D A -2.7834
234 E A 0.0000
235 L A -1.7636
236 T A -1.5346
237 K A -2.1070
238 N A -2.3713
239 Q A -2.1140
240 V A 0.0000
241 S A 0.0000
242 L A 0.0000
243 T A 0.0000
244 C A 0.0000
245 L A 0.0000
246 V A 0.0000
247 K A -0.7817
248 G A -1.3238
249 F A 0.0000
250 Y A 0.0000
251 P A 0.0000
252 S A -0.4787
253 D A -0.8904
254 I A -0.4296
255 A A -0.3509
256 V A 0.0000
257 E A -1.0071
258 W A 0.0000
259 E A -1.9524
260 S A 0.0000
261 N A -1.9232
262 G A -1.9117
263 Q A -2.3172
264 P A -1.9308
265 E A 0.0000
266 N A -2.0062
267 N A -1.4315
268 Y A 0.0000
269 K A 0.0000
270 T A -0.2068
271 T A 0.0000
272 P A 0.0156
273 P A -0.1344
274 V A 0.0000
275 L A -0.3428
276 D A -1.0735
277 S A -1.7436
278 D A -2.0942
279 G A -1.0891
280 S A 0.0000
281 F A -0.5016
282 F A 0.0000
283 L A 0.0000
284 Y A 0.0000
285 S A 0.0000
286 K A 0.0000
287 L A 0.0000
288 T A -0.8034
289 V A 0.0000
290 D A -2.2267
291 K A -2.3845
292 S A -2.0937
293 R A -1.9447
294 W A 0.0000
295 Q A -2.3592
296 Q A -2.1576
297 G A -1.3093
298 N A -0.8955
299 V A 0.0677
300 F A 0.0000
301 S A -1.0312
302 C A 0.0000
303 S A 0.0000
304 V A 0.0000
305 M A 0.0000
306 H A 0.0000
307 E A -1.1102
308 A A -1.6150
309 L A -1.4550
310 H A -1.7459
311 N A -1.4336
312 H A -0.8989
313 Y A -0.5212
314 T A -0.9627
315 Q A -1.6123
316 K A -1.3617
317 S A -0.7246
318 L A 0.0000
319 S A -0.2788
320 L A -0.5267
321 S A -0.7868
322 P A -1.1501
323 G A -1.4470
324 K A -2.0304
1 N B -1.1987
2 A B -0.6773
3 S B -0.5473
4 C B 0.1000
5 E B -0.8219
6 Y B 0.6691
7 S B 0.2509
8 A B 0.1344
9 S B -0.0432
10 H B 0.0000
11 K B -1.0542
12 Q B -1.2526
13 D B -1.4300
14 L B 0.0000
15 L B 0.5409
16 L B 0.5411
17 G B -0.1599
18 S B -0.1103
19 T B -0.2206
20 G B 0.0989
21 S B 0.1963
22 I B 0.0000
23 S B -0.1267
24 C B 0.0000
25 P B 0.0000
26 S B -0.1088
27 L B 0.0000
28 S B -0.0677
29 C B 0.2491
30 Q B -0.8346
31 S B -1.3138
32 D B -2.1245
33 A B -1.2854
34 Q B -1.7086
35 S B -1.5466
36 P B -1.0721
37 A B -1.0202
38 V B 0.0000
39 T B -0.3073
40 W B 0.0000
41 Y B 0.0000
42 K B -0.7238
43 N B -1.0862
44 G B -0.5599
45 K B -0.5867
46 L B 0.4904
47 L B 0.2181
48 S B 0.0023
49 V B 0.1906
50 E B -0.7460
51 R B -1.8883
52 S B -1.3494
53 N B 0.0000
54 R B -0.7819
55 I B 0.0000
56 V B 1.3037
57 V B 0.0000
58 D B -0.3322
59 E B 0.0000
60 V B 0.0000
61 Y B -0.1990
62 D B -0.6231
63 Y B -0.9195
64 H B -1.0689
65 Q B -1.7041
66 G B -1.1936
67 T B 0.0000
68 Y B 0.0000
69 V B 0.0000
70 C B 0.0000
71 D B 0.0000
72 Y B 0.0000
73 T B -0.2852
74 Q B -1.0550
75 S B -1.0381
76 D B -1.3465
77 T B -0.0970
78 V B 1.0834
79 S B 0.0301
80 S B -0.4171
81 W B -0.1297
82 T B 0.0135
83 V B 0.1291
84 R B 0.0000
85 A B 0.0000
86 V B 0.0000
87 V B 0.0000
88 Q B -1.0722
89 V B 0.0000
90 R B -1.8173
91 T B -0.4389
92 I B 0.6724
93 V B 1.2524
94 G B -0.0934
95 D B -2.2983
96 T B -2.3841
97 K B -3.6855
98 D B -3.9600
99 K B -3.5719
100 T B -2.0471
101 H B -1.5877
102 T B -0.8793
103 C B 0.3122
104 P B -0.0159
105 P B 0.1080
106 C B 0.5197
107 P B -0.3710
108 A B -0.5438
109 P B -1.0411
110 E B -2.0243
111 A B -1.0577
112 A B -0.7800
113 G B -0.9672
114 G B -0.7165
115 P B 0.0000
116 S B -0.2025
117 V B 0.0000
118 F B -0.2684
119 L B 0.0000
120 F B 0.0000
121 P B -0.2328
122 P B 0.0000
123 K B -1.0433
124 P B -0.8959
125 K B -0.8941
126 D B -0.7175
127 T B 0.0000
128 L B 0.0000
129 M B 0.3135
130 I B 1.3572
131 S B 0.2630
132 R B -0.7360
133 T B -0.3357
134 P B 0.0000
135 E B -0.5541
136 V B 0.0000
137 T B 0.0000
138 C B 0.0000
139 V B 0.0000
140 V B 0.0000
141 V B 0.0000
142 D B -0.7778
143 V B 0.0000
144 S B -1.7006
145 H B -2.1229
146 E B -2.7811
147 D B -2.4834
148 P B -2.3935
149 E B -3.0329
150 V B -1.9369
151 K B -2.2565
152 F B -1.1702
153 N B -1.0959
154 W B 0.0000
155 Y B -0.3865
156 V B -0.5225
157 D B -1.4089
158 G B -0.5246
159 V B 0.8218
160 E B -0.5296
161 V B -0.5254
162 H B -1.8816
163 N B -2.1869
164 A B -1.8020
165 K B -2.3397
166 T B -1.7109
167 K B -1.7089
168 P B -1.8825
169 R B -2.7501
170 E B -2.8670
171 E B -2.7046
172 Q B 0.0000
173 Y B -0.0253
174 N B -0.4085
175 S B -0.6388
176 T B -1.2208
177 Y B -1.6882
178 R B 0.0000
179 V B 0.0000
180 V B 0.0000
181 S B 0.0000
182 V B 0.0000
183 L B 0.0000
184 T B -0.5106
185 V B 0.0000
186 L B 0.5272
187 H B -0.1762
188 Q B -1.2560
189 D B -1.4301
190 W B 0.0000
191 L B -1.1202
192 N B -2.0437
193 G B -1.9268
194 K B -2.0036
195 E B -1.9132
196 Y B 0.0000
197 K B -1.2978
198 C B 0.0000
199 K B -1.2309
200 V B 0.0000
201 S B -1.4487
202 N B 0.0000
203 K B -2.6163
204 A B -1.5099
205 L B -0.7081
206 G B -0.6623
207 A B -0.3787
208 P B -0.8174
209 I B -0.4106
210 E B -1.4005
211 K B -1.0350
212 T B -0.7998
213 I B 0.0000
214 S B 0.0000
215 K B 0.0000
216 A B -1.1031
217 K B -1.9874
218 G B -1.8862
219 Q B -2.1634
220 P B -1.9554
221 R B -2.4721
222 E B -2.8231
223 P B 0.0000
224 Q B -1.2888
225 V B 0.0000
226 Y B 0.0000
227 T B -0.8475
228 L B 0.0000
229 P B -0.3868
230 P B -0.8407
231 S B 0.0000
232 R B -2.6465
233 D B -2.7890
234 E B 0.0000
235 L B -1.7408
236 T B -1.4942
237 K B -2.0155
238 N B -2.3215
239 Q B -2.0839
240 V B 0.0000
241 S B 0.0000
242 L B 0.0000
243 T B 0.0000
244 C B 0.0000
245 L B 0.0000
246 V B 0.0000
247 K B -0.7886
248 G B -1.3377
249 F B 0.0000
250 Y B 0.0000
251 P B 0.0000
252 S B -0.6897
253 D B -1.2129
254 I B -0.6026
255 A B -0.4826
256 V B 0.0000
257 E B -1.1565
258 W B 0.0000
259 E B -1.8800
260 S B 0.0000
261 N B -1.9027
262 G B -1.8854
263 Q B -2.2927
264 P B -1.9236
265 E B 0.0000
266 N B -2.0763
267 N B -1.5150
268 Y B 0.0000
269 K B -1.0291
270 T B -0.3131
271 T B 0.0000
272 P B -0.1043
273 P B -0.2603
274 V B 0.0000
275 L B -0.3203
276 D B -1.0153
277 S B -1.6410
278 D B -2.0769
279 G B -1.0884
280 S B 0.0000
281 F B 0.0000
282 F B 0.0000
283 L B 0.0000
284 Y B 0.0000
285 S B 0.0000
286 K B 0.0000
287 L B 0.0000
288 T B -0.8542
289 V B 0.0000
290 D B -2.1923
291 K B -2.3648
292 S B -2.1016
293 R B -1.9561
294 W B 0.0000
295 Q B -2.3219
296 Q B -2.1421
297 G B -1.2575
298 N B -0.8823
299 V B 0.1070
300 F B 0.0000
301 S B 0.0000
302 C B 0.0000
303 S B 0.0000
304 V B 0.0000
305 M B 0.0000
306 H B 0.0000
307 E B -1.2466
308 A B -1.7080
309 L B 0.0000
310 H B -1.8434
311 N B -1.5068
312 H B -1.0218
313 Y B -0.6146
314 T B -0.9674
315 Q B -1.5320
316 K B -1.3875
317 S B -0.7191
318 L B 0.0000
319 S B -0.1953
320 L B -0.3473
321 S B -0.7048
322 P B -1.0984
323 G B -1.4203
324 K B -2.0326
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Laboratory of Theory of Biopolymers 2018