Project name: ranjan

Status: done

Started: 2025-07-22 05:34:56
Settings
Chain sequence(s) A: VREVCSEQAETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:36)
Show buried residues

Minimal score value
-3.0318
Maximal score value
1.646
Average score
-0.791
Total score value
-44.2975

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 0.3789
2 R A -1.7824
3 E A -2.5746
4 V A -1.7717
5 C A 0.0000
6 S A -1.7455
7 E A -3.0318
8 Q A -2.4652
9 A A -1.7302
10 E A -1.9199
11 T A -0.5660
12 G A -0.9520
13 P A -0.9172
14 C A -0.8516
15 R A -1.5024
16 A A 0.0312
17 M A 1.4700
18 I A 1.2933
19 S A 0.5075
20 R A -0.4926
21 W A -0.8032
22 Y A -0.8947
23 F A 0.0000
24 D A -0.9518
25 V A 0.2255
26 T A -0.5122
27 E A -1.9367
28 G A -1.2748
29 K A -1.7820
30 C A -1.1117
31 A A -0.8335
32 P A -0.2344
33 F A 0.7366
34 F A 1.6460
35 Y A 0.0000
36 G A 0.0000
37 G A -0.2897
38 C A -0.6958
39 G A -1.0653
40 G A -1.8061
41 N A -2.1237
42 R A -2.5795
43 N A 0.0000
44 N A -1.6038
45 F A 0.0000
46 D A -2.1055
47 T A -1.6848
48 E A -2.1375
49 E A -1.8489
50 Y A -0.1664
51 C A 0.0000
52 M A -0.2688
53 A A 0.3054
54 V A 0.7189
55 C A 0.0000
56 G A -0.5969
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Laboratory of Theory of Biopolymers 2018