| Chain sequence(s) |
D: ISEVQLVESGGGLVQPGGSLRLSCAASGFNVYYSSIHWVRQAPGKGLEWVAYISPYYGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSDYSSWPYAWVGHYRALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKT
input PDB |
| Selected Chain(s) | D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | DY100D,AG107D |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.0760447 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with D chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:01:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:01:23)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:20)
[INFO] Main: Simulation completed successfully. (00:02:22)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| -1 | I | D | 1.1328 | |
| 0 | S | D | -0.3325 | |
| 1 | E | D | -1.7108 | |
| 2 | V | D | -0.7136 | |
| 3 | Q | D | -1.0617 | |
| 4 | L | D | 0.0000 | |
| 5 | V | D | 1.1739 | |
| 6 | E | D | 0.3264 | |
| 7 | S | D | -0.1091 | |
| 8 | G | D | -0.8016 | |
| 9 | G | D | -0.2796 | |
| 10 | G | D | 0.1472 | |
| 11 | L | D | 0.2721 | |
| 12 | V | D | -0.3184 | |
| 13 | Q | D | -1.0755 | |
| 14 | P | D | -1.3247 | |
| 15 | G | D | -1.3464 | |
| 16 | G | D | -1.0399 | |
| 17 | S | D | -0.9539 | |
| 18 | L | D | -0.8132 | |
| 19 | R | D | -1.3219 | |
| 20 | L | D | 0.0000 | |
| 21 | S | D | -0.1606 | |
| 22 | C | D | 0.0000 | |
| 23 | A | D | -0.0226 | |
| 24 | A | D | -0.4980 | |
| 25 | S | D | -0.8606 | |
| 26 | G | D | -0.9349 | |
| 27 | F | D | -0.1322 | |
| 28 | N | D | -0.5441 | |
| 29 | V | D | 0.0000 | |
| 30 | Y | D | 1.1430 | |
| 31 | Y | D | 1.6519 | |
| 32 | S | D | 0.0000 | |
| 33 | S | D | 0.0000 | |
| 34 | I | D | 0.0000 | |
| 35 | H | D | 0.0000 | |
| 36 | W | D | 0.0000 | |
| 37 | V | D | 0.0000 | |
| 38 | R | D | 0.0000 | |
| 39 | Q | D | -0.4176 | |
| 40 | A | D | -1.0806 | |
| 41 | P | D | -0.8354 | |
| 42 | G | D | -1.4474 | |
| 43 | K | D | -2.0613 | |
| 44 | G | D | -0.9186 | |
| 45 | L | D | 0.5933 | |
| 46 | E | D | -0.0608 | |
| 47 | W | D | 0.4276 | |
| 48 | V | D | 0.0000 | |
| 49 | A | D | 0.0000 | |
| 50 | Y | D | 0.0000 | |
| 51 | I | D | 0.0000 | |
| 52 | S | D | 0.0000 | |
| 53 | P | D | 0.7294 | |
| 54 | Y | D | 1.3527 | |
| 55 | Y | D | 1.1482 | |
| 56 | G | D | 0.1135 | |
| 57 | S | D | 0.1576 | |
| 58 | T | D | 0.0074 | |
| 59 | S | D | -0.3591 | |
| 60 | Y | D | -0.8425 | |
| 61 | A | D | -1.3523 | |
| 62 | D | D | -2.4965 | |
| 63 | S | D | -1.6892 | |
| 64 | V | D | 0.0000 | |
| 65 | K | D | -2.6201 | |
| 66 | G | D | -1.7699 | |
| 67 | R | D | -1.2571 | |
| 68 | F | D | 0.0000 | |
| 69 | T | D | -0.7037 | |
| 70 | I | D | 0.0000 | |
| 71 | S | D | -0.2217 | |
| 72 | A | D | -0.4551 | |
| 73 | D | D | -1.0112 | |
| 74 | T | D | -0.8481 | |
| 75 | S | D | -1.3056 | |
| 76 | K | D | -2.1885 | |
| 77 | N | D | -1.4052 | |
| 78 | T | D | 0.0000 | |
| 79 | A | D | 0.0000 | |
| 80 | Y | D | -0.3209 | |
| 81 | L | D | 0.0000 | |
| 82 | Q | D | -0.8731 | |
| 83 | M | D | 0.0000 | |
| 84 | N | D | -1.4031 | |
| 85 | S | D | -1.3151 | |
| 86 | L | D | 0.0000 | |
| 87 | R | D | -2.2239 | |
| 88 | A | D | -1.6757 | |
| 89 | E | D | -2.1936 | |
| 90 | D | D | 0.0000 | |
| 91 | T | D | -0.6294 | |
| 92 | A | D | 0.0000 | |
| 93 | V | D | 0.5851 | |
| 94 | Y | D | 0.0000 | |
| 95 | Y | D | 0.5416 | |
| 96 | C | D | 0.0000 | |
| 97 | A | D | 0.0000 | |
| 98 | R | D | 0.0000 | |
| 99 | S | D | 0.0000 | |
| 100 | Y | D | 0.5223 | mutated: DY100D |
| 101 | Y | D | 0.0000 | |
| 102 | S | D | 0.0223 | |
| 103 | S | D | 0.2526 | |
| 104 | W | D | 0.9713 | |
| 105 | P | D | 0.3275 | |
| 106 | Y | D | 0.7911 | |
| 107 | G | D | 0.1486 | mutated: AG107D |
| 108 | W | D | 0.6018 | |
| 109 | V | D | -0.0570 | |
| 110 | G | D | 0.0000 | |
| 111 | H | D | -0.6817 | |
| 112 | Y | D | -0.4316 | |
| 113 | R | D | -1.4356 | |
| 114 | A | D | -0.4462 | |
| 115 | L | D | 0.1161 | |
| 116 | D | D | 0.1327 | |
| 117 | Y | D | 0.7118 | |
| 118 | W | D | 0.4947 | |
| 119 | G | D | -0.0725 | |
| 120 | Q | D | -0.9081 | |
| 121 | G | D | 0.0000 | |
| 122 | T | D | 0.0000 | |
| 123 | L | D | 0.9528 | |
| 124 | V | D | 0.0000 | |
| 125 | T | D | 0.0000 | |
| 126 | V | D | 0.0000 | |
| 127 | S | D | -0.7504 | |
| 128 | S | D | -0.6676 | |
| 129 | A | D | -0.4184 | |
| 130 | S | D | -0.4935 | |
| 131 | T | D | -0.6320 | |
| 132 | K | D | -1.1835 | |
| 133 | G | D | -1.3702 | |
| 134 | P | D | -0.5286 | |
| 135 | S | D | -0.0736 | |
| 136 | V | D | 0.0000 | |
| 137 | F | D | 1.1803 | |
| 138 | P | D | 0.0812 | |
| 139 | L | D | 0.4103 | |
| 140 | A | D | -0.8454 | |
| 141 | P | D | 0.0000 | |
| 142 | S | D | -1.1465 | |
| 143 | S | D | -1.2188 | |
| 144 | K | D | -1.8922 | |
| 145 | S | D | -1.0487 | |
| 146 | T | D | -1.0535 | |
| 147 | S | D | -0.9315 | |
| 148 | G | D | -0.8847 | |
| 149 | G | D | -0.9134 | |
| 150 | T | D | -0.6655 | |
| 151 | A | D | 0.0000 | |
| 152 | A | D | -0.1667 | |
| 153 | L | D | 0.0000 | |
| 154 | G | D | 0.0000 | |
| 155 | C | D | 0.0000 | |
| 156 | L | D | 0.7068 | |
| 157 | V | D | 0.0000 | |
| 158 | K | D | -0.1222 | |
| 159 | D | D | -0.3655 | |
| 160 | Y | D | 0.0000 | |
| 161 | F | D | 0.0000 | |
| 162 | P | D | 0.0000 | |
| 163 | E | D | -0.8484 | |
| 164 | P | D | -0.8950 | |
| 165 | V | D | -0.5681 | |
| 166 | T | D | -0.5319 | |
| 167 | V | D | -0.2016 | |
| 168 | S | D | -0.3489 | |
| 169 | W | D | 0.0000 | |
| 170 | N | D | -0.7673 | |
| 171 | S | D | -0.6213 | |
| 172 | G | D | -0.4237 | |
| 173 | A | D | -0.2193 | |
| 174 | L | D | 0.0353 | |
| 175 | T | D | -0.2494 | |
| 176 | S | D | -0.3286 | |
| 177 | G | D | -0.4088 | |
| 178 | V | D | 0.0158 | |
| 179 | H | D | -0.5548 | |
| 180 | T | D | 0.0143 | |
| 181 | F | D | 0.7240 | |
| 182 | P | D | 0.4267 | |
| 183 | A | D | 1.0571 | |
| 184 | V | D | 2.3229 | |
| 185 | L | D | 1.9026 | |
| 186 | Q | D | 0.6628 | |
| 187 | S | D | 0.0500 | |
| 188 | S | D | -0.1890 | |
| 189 | G | D | 0.2722 | |
| 190 | L | D | 0.2601 | |
| 191 | Y | D | 0.6815 | |
| 192 | S | D | 0.0000 | |
| 193 | L | D | 0.0000 | |
| 194 | S | D | 0.5654 | |
| 195 | S | D | 0.0000 | |
| 196 | V | D | 0.3582 | |
| 197 | V | D | 0.0000 | |
| 198 | T | D | -0.2348 | |
| 199 | V | D | 0.0000 | |
| 200 | P | D | -0.6051 | |
| 201 | S | D | -0.6831 | |
| 202 | S | D | -0.5898 | |
| 203 | S | D | -0.6377 | |
| 204 | L | D | -0.8350 | |
| 205 | G | D | -1.0311 | |
| 206 | T | D | -0.7312 | |
| 207 | Q | D | -1.3124 | |
| 208 | T | D | -1.1338 | |
| 209 | Y | D | 0.0000 | |
| 210 | I | D | -1.1155 | |
| 211 | C | D | 0.0000 | |
| 212 | N | D | -1.4252 | |
| 213 | V | D | 0.0000 | |
| 214 | N | D | -1.7556 | |
| 215 | H | D | 0.0000 | |
| 216 | K | D | -2.8091 | |
| 217 | P | D | -1.6760 | |
| 218 | S | D | -1.8275 | |
| 219 | N | D | -2.6031 | |
| 220 | T | D | -2.1848 | |
| 221 | K | D | -2.6305 | |
| 222 | V | D | -1.5973 | |
| 223 | D | D | -2.5501 | |
| 224 | K | D | -1.9098 | |
| 225 | K | D | -2.5037 | |
| 226 | V | D | 0.0000 | |
| 227 | E | D | -2.6745 | |
| 228 | P | D | -1.5033 | |
| 229 | K | D | -2.0066 | |
| 230 | S | D | -1.4684 | |
| 231 | C | D | -1.0386 | |
| 232 | D | D | -2.4967 | |
| 233 | K | D | -2.5680 | |
| 234 | T | D | -1.4790 |