Project name: ANX [mutate: YD100D] [mutate: AG107D, DY100D]

Status: done

Started: 2025-12-31 22:51:14
Settings
Chain sequence(s) D: ISEVQLVESGGGLVQPGGSLRLSCAASGFNVYYSSIHWVRQAPGKGLEWVAYISPYYGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSDYSSWPYAWVGHYRALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKT
input PDB
Selected Chain(s) D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues DY100D,AG107D
Energy difference between WT (input) and mutated protein (by FoldX) 0.0760447 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with D chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:01:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:23)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:22)
Show buried residues

Minimal score value
-2.8091
Maximal score value
2.3229
Average score
-0.4375
Total score value
-103.2398

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
-1 I D 1.1328
0 S D -0.3325
1 E D -1.7108
2 V D -0.7136
3 Q D -1.0617
4 L D 0.0000
5 V D 1.1739
6 E D 0.3264
7 S D -0.1091
8 G D -0.8016
9 G D -0.2796
10 G D 0.1472
11 L D 0.2721
12 V D -0.3184
13 Q D -1.0755
14 P D -1.3247
15 G D -1.3464
16 G D -1.0399
17 S D -0.9539
18 L D -0.8132
19 R D -1.3219
20 L D 0.0000
21 S D -0.1606
22 C D 0.0000
23 A D -0.0226
24 A D -0.4980
25 S D -0.8606
26 G D -0.9349
27 F D -0.1322
28 N D -0.5441
29 V D 0.0000
30 Y D 1.1430
31 Y D 1.6519
32 S D 0.0000
33 S D 0.0000
34 I D 0.0000
35 H D 0.0000
36 W D 0.0000
37 V D 0.0000
38 R D 0.0000
39 Q D -0.4176
40 A D -1.0806
41 P D -0.8354
42 G D -1.4474
43 K D -2.0613
44 G D -0.9186
45 L D 0.5933
46 E D -0.0608
47 W D 0.4276
48 V D 0.0000
49 A D 0.0000
50 Y D 0.0000
51 I D 0.0000
52 S D 0.0000
53 P D 0.7294
54 Y D 1.3527
55 Y D 1.1482
56 G D 0.1135
57 S D 0.1576
58 T D 0.0074
59 S D -0.3591
60 Y D -0.8425
61 A D -1.3523
62 D D -2.4965
63 S D -1.6892
64 V D 0.0000
65 K D -2.6201
66 G D -1.7699
67 R D -1.2571
68 F D 0.0000
69 T D -0.7037
70 I D 0.0000
71 S D -0.2217
72 A D -0.4551
73 D D -1.0112
74 T D -0.8481
75 S D -1.3056
76 K D -2.1885
77 N D -1.4052
78 T D 0.0000
79 A D 0.0000
80 Y D -0.3209
81 L D 0.0000
82 Q D -0.8731
83 M D 0.0000
84 N D -1.4031
85 S D -1.3151
86 L D 0.0000
87 R D -2.2239
88 A D -1.6757
89 E D -2.1936
90 D D 0.0000
91 T D -0.6294
92 A D 0.0000
93 V D 0.5851
94 Y D 0.0000
95 Y D 0.5416
96 C D 0.0000
97 A D 0.0000
98 R D 0.0000
99 S D 0.0000
100 Y D 0.5223 mutated: DY100D
101 Y D 0.0000
102 S D 0.0223
103 S D 0.2526
104 W D 0.9713
105 P D 0.3275
106 Y D 0.7911
107 G D 0.1486 mutated: AG107D
108 W D 0.6018
109 V D -0.0570
110 G D 0.0000
111 H D -0.6817
112 Y D -0.4316
113 R D -1.4356
114 A D -0.4462
115 L D 0.1161
116 D D 0.1327
117 Y D 0.7118
118 W D 0.4947
119 G D -0.0725
120 Q D -0.9081
121 G D 0.0000
122 T D 0.0000
123 L D 0.9528
124 V D 0.0000
125 T D 0.0000
126 V D 0.0000
127 S D -0.7504
128 S D -0.6676
129 A D -0.4184
130 S D -0.4935
131 T D -0.6320
132 K D -1.1835
133 G D -1.3702
134 P D -0.5286
135 S D -0.0736
136 V D 0.0000
137 F D 1.1803
138 P D 0.0812
139 L D 0.4103
140 A D -0.8454
141 P D 0.0000
142 S D -1.1465
143 S D -1.2188
144 K D -1.8922
145 S D -1.0487
146 T D -1.0535
147 S D -0.9315
148 G D -0.8847
149 G D -0.9134
150 T D -0.6655
151 A D 0.0000
152 A D -0.1667
153 L D 0.0000
154 G D 0.0000
155 C D 0.0000
156 L D 0.7068
157 V D 0.0000
158 K D -0.1222
159 D D -0.3655
160 Y D 0.0000
161 F D 0.0000
162 P D 0.0000
163 E D -0.8484
164 P D -0.8950
165 V D -0.5681
166 T D -0.5319
167 V D -0.2016
168 S D -0.3489
169 W D 0.0000
170 N D -0.7673
171 S D -0.6213
172 G D -0.4237
173 A D -0.2193
174 L D 0.0353
175 T D -0.2494
176 S D -0.3286
177 G D -0.4088
178 V D 0.0158
179 H D -0.5548
180 T D 0.0143
181 F D 0.7240
182 P D 0.4267
183 A D 1.0571
184 V D 2.3229
185 L D 1.9026
186 Q D 0.6628
187 S D 0.0500
188 S D -0.1890
189 G D 0.2722
190 L D 0.2601
191 Y D 0.6815
192 S D 0.0000
193 L D 0.0000
194 S D 0.5654
195 S D 0.0000
196 V D 0.3582
197 V D 0.0000
198 T D -0.2348
199 V D 0.0000
200 P D -0.6051
201 S D -0.6831
202 S D -0.5898
203 S D -0.6377
204 L D -0.8350
205 G D -1.0311
206 T D -0.7312
207 Q D -1.3124
208 T D -1.1338
209 Y D 0.0000
210 I D -1.1155
211 C D 0.0000
212 N D -1.4252
213 V D 0.0000
214 N D -1.7556
215 H D 0.0000
216 K D -2.8091
217 P D -1.6760
218 S D -1.8275
219 N D -2.6031
220 T D -2.1848
221 K D -2.6305
222 V D -1.5973
223 D D -2.5501
224 K D -1.9098
225 K D -2.5037
226 V D 0.0000
227 E D -2.6745
228 P D -1.5033
229 K D -2.0066
230 S D -1.4684
231 C D -1.0386
232 D D -2.4967
233 K D -2.5680
234 T D -1.4790
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018