| Chain sequence(s) |
A: CYWKVCT
C: CYWKVCT B: CYWKVCT E: CYWKVCT D: CYWKVCT G: CYWKVCT F: CYWKVCT H: CYWKVCT input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:36)
[INFO] Main: Simulation completed successfully. (00:02:38)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | C | A | 0.8882 | |
| 3 | Y | A | 0.8068 | |
| 4 | W | A | 0.8549 | |
| 5 | K | A | -0.8322 | |
| 6 | V | A | 0.0000 | |
| 7 | C | A | 0.3760 | |
| 8 | T | A | -0.1381 | |
| 102 | C | B | 0.9225 | |
| 103 | Y | B | 0.7366 | |
| 104 | W | B | 0.8632 | |
| 105 | K | B | -0.7834 | |
| 106 | V | B | 0.0000 | |
| 107 | C | B | 0.4914 | |
| 108 | T | B | 0.0807 | |
| 202 | C | C | 0.9935 | |
| 203 | Y | C | 1.0883 | |
| 204 | W | C | 1.1254 | |
| 205 | K | C | -0.2617 | |
| 206 | V | C | 0.0000 | |
| 207 | C | C | 0.4722 | |
| 208 | T | C | 0.0002 | |
| 302 | C | D | 0.8409 | |
| 303 | Y | D | 0.0000 | |
| 304 | W | D | 0.2289 | |
| 305 | K | D | -1.1085 | |
| 306 | V | D | 0.0000 | |
| 307 | C | D | 0.3515 | |
| 308 | T | D | -0.0377 | |
| 402 | C | E | 0.9053 | |
| 403 | Y | E | 0.7398 | |
| 404 | W | E | 0.8185 | |
| 405 | K | E | -0.7648 | |
| 406 | V | E | 0.1907 | |
| 407 | C | E | 0.4182 | |
| 408 | T | E | 0.1236 | |
| 502 | C | F | 0.8389 | |
| 503 | Y | F | 0.8801 | |
| 504 | W | F | 0.8319 | |
| 505 | K | F | -0.8460 | |
| 506 | V | F | 0.0000 | |
| 507 | C | F | 0.2838 | |
| 508 | T | F | 0.0744 | |
| 602 | C | G | 0.6232 | |
| 603 | Y | G | 0.0000 | |
| 604 | W | G | 0.8341 | |
| 605 | K | G | -0.6205 | |
| 606 | V | G | 0.0000 | |
| 607 | C | G | 0.1855 | |
| 608 | T | G | -0.1417 | |
| 702 | C | H | 0.9520 | |
| 703 | Y | H | 0.8300 | |
| 704 | W | H | 0.8839 | |
| 705 | K | H | -0.8137 | |
| 706 | V | H | 0.0000 | |
| 707 | C | H | 0.4688 | |
| 708 | T | H | 0.1648 |