Project name: trma01-fv

Status: done

Started: 2026-06-12 08:13:57
Settings
Chain sequence(s) A: ESKYGPPCPPCPAPEAAGGPSVFLFPPKPKDTLYITREPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSIEKTISKAKGQPREPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSRLTVDKSRWQEGNVFSCSVMHEALHNHYTQKSLSLSLGK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:01)
Show buried residues

Minimal score value
-3.4794
Maximal score value
1.5571
Average score
-0.9297
Total score value
-212.8914

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -2.2039
2 S A -1.5631
3 K A -1.8062
4 Y A -0.1302
5 G A -0.3767
6 P A -0.3149
7 P A -0.0154
8 C A 0.4060
9 P A 0.0216
10 P A 0.0731
11 C A 0.5152
12 P A -0.4325
13 A A -0.5711
14 P A -1.0421
15 E A -2.0132
16 A A -1.0580
17 A A -0.8510
18 G A -0.9753
19 G A -0.7694
20 P A 0.0000
21 S A -0.0585
22 V A 0.0000
23 F A 0.7091
24 L A 0.0000
25 F A 0.8942
26 P A -0.2600
27 P A 0.0000
28 K A -2.2364
29 P A -1.3124
30 K A -1.1196
31 D A -1.4195
32 T A 0.0000
33 L A 0.0000
34 Y A 0.4812
35 I A 1.3547
36 T A 0.1382
37 R A -1.3298
38 E A -2.1610
39 P A 0.0000
40 E A -1.4030
41 V A 0.0000
42 T A 0.1384
43 C A 0.0000
44 V A 0.0000
45 V A 0.0000
46 V A -0.8420
47 D A -1.4668
48 V A 0.0000
49 S A -2.2384
50 Q A -2.8851
51 E A -3.1720
52 D A -2.8680
53 P A -2.8458
54 E A -3.0869
55 V A -1.8343
56 Q A -1.7561
57 F A -1.2105
58 N A -1.1184
59 W A 0.0000
60 Y A -0.7012
61 V A -0.9357
62 D A -2.1716
63 G A -0.9162
64 V A 0.5412
65 E A -0.7457
66 V A -0.5755
67 H A -1.8973
68 N A -2.1570
69 A A -1.8581
70 K A -2.4517
71 T A -1.9911
72 K A -2.5402
73 P A -2.4483
74 R A -3.4794
75 E A -3.3236
76 E A -3.0829
77 Q A -1.2394
78 F A 0.8695
79 N A -0.3514
80 S A -0.8762
81 T A -1.7832
82 Y A 0.0000
83 R A -2.3228
84 V A 0.0000
85 V A 0.0000
86 S A 0.0000
87 V A -0.8819
88 L A 0.0000
89 T A -0.9976
90 V A 0.0000
91 L A 0.4525
92 H A 0.0000
93 Q A -1.0883
94 D A -1.3453
95 W A 0.0000
96 L A -0.9405
97 N A -2.0504
98 G A -2.0935
99 K A -2.1632
100 E A -2.1282
101 Y A 0.0000
102 K A -1.8083
103 C A 0.0000
104 K A -1.5964
105 V A 0.0000
106 S A -1.3553
107 N A 0.0000
108 K A -2.7221
109 G A -2.0518
110 L A -0.8186
111 P A -0.6618
112 S A -0.6848
113 S A -0.8507
114 I A -0.6879
115 E A -2.2547
116 K A -1.5900
117 T A -1.2201
118 I A -0.3353
119 S A -1.1522
120 K A -1.2659
121 A A -1.1639
122 K A -2.3526
123 G A -1.9698
124 Q A -2.1118
125 P A -1.7109
126 R A -2.0799
127 E A -2.7261
128 P A 0.0000
129 Q A -1.3706
130 V A 0.0000
131 Y A 0.5170
132 T A 0.2837
133 L A 0.4833
134 P A -0.1522
135 P A -0.8068
136 S A -1.4236
137 Q A -2.2586
138 E A -2.8489
139 E A -2.4806
140 M A -2.1839
141 T A -2.0326
142 K A -3.1068
143 N A -2.9053
144 Q A -2.5573
145 V A 0.0000
146 S A -0.8661
147 L A 0.0000
148 T A -0.1362
149 C A 0.0000
150 L A 0.4446
151 V A 0.0000
152 K A -0.6934
153 G A -1.3162
154 F A 0.0000
155 Y A -0.9843
156 P A 0.0000
157 S A 0.0573
158 D A -1.0467
159 I A 0.0000
160 A A -0.6124
161 V A 0.0000
162 E A -1.2670
163 W A 0.0000
164 E A -1.6235
165 S A 0.0000
166 N A -1.8602
167 G A -1.8181
168 Q A -2.2155
169 P A -1.9040
170 E A 0.0000
171 N A -2.4137
172 N A -2.2924
173 Y A -2.0790
174 K A -2.4179
175 T A -1.0654
176 T A -0.3257
177 P A 0.0519
178 P A 0.6509
179 V A 1.5571
180 L A 1.2943
181 D A -0.5467
182 S A -1.0958
183 D A -2.0325
184 G A -0.8474
185 S A 0.0000
186 F A 0.3950
187 F A 0.6830
188 L A 0.0000
189 Y A 0.3534
190 S A 0.0000
191 R A -1.5910
192 L A 0.0000
193 T A -1.4684
194 V A 0.0000
195 D A -2.5465
196 K A -2.8255
197 S A -2.3424
198 R A -2.1315
199 W A 0.0000
200 Q A -2.6081
201 E A -2.7231
202 G A -1.2402
203 N A -1.0495
204 V A 0.2519
205 F A 0.0000
206 S A 0.0000
207 C A 0.0000
208 S A 0.0000
209 V A 0.0000
210 M A 0.0000
211 H A 0.0000
212 E A -1.0096
213 A A -1.4684
214 L A -1.4304
215 H A -1.7437
216 N A -1.4240
217 H A -0.8847
218 Y A -0.3746
219 T A -0.7350
220 Q A -0.9531
221 K A -1.0330
222 S A -0.1834
223 L A 0.0000
224 S A 0.0000
225 L A -0.3980
226 S A -0.2480
227 L A 0.8424
228 G A -0.4706
229 K A -1.4263
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Laboratory of Theory of Biopolymers 2018