Project name: sol_842_1st

Status: done

Started: 2024-06-18 22:29:25
Settings
Chain sequence(s) A: SFKLPEDFGKRPSDLELSVKLVEMLRNIMLRLGCQLSREEIEKVKEDPRLINLGLEARYNVRPKLAKELAEELRLKNIESLALLLCGVSPSGNLGLEYTAKVNGNLELALVMWFEDNRYAREHIPELLEKYSKGIYPEDLSDKVPYKGIEISLKLVLKPIEEGIEIREKDPSKLEPLLSKLEKEVEELSKEVKKLSEENVGDTIKYSISPKILEAVREFPKRMYEEGEKIAKEAGLSEEDVKAIALLVATVNVQLCSTILNVAFPKEVIGEIFFFPLLLMKEQEKFFEEVVKKYKEELKKKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:39)
Show buried residues

Minimal score value
-4.9526
Maximal score value
1.7649
Average score
-1.4205
Total score value
-429.0024

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -0.6803
2 F A -0.6245
3 K A -2.1733
4 L A -1.3300
5 P A -1.5471
6 E A -3.0526
7 D A -3.1854
8 F A -1.7430
9 G A -1.4519
10 K A -2.4609
11 R A -1.8971
12 P A -0.9805
13 S A -0.8013
14 D A -0.7879
15 L A 0.5649
16 E A -0.5699
17 L A -0.2776
18 S A 1.0043
19 V A 1.7649
20 K A 0.3957
21 L A 1.1585
22 V A 1.4870
23 E A 0.3415
24 M A 0.0081
25 L A 0.5579
26 R A -0.4490
27 N A 0.0000
28 I A -0.1894
29 M A 0.0000
30 L A 0.0000
31 R A -0.9975
32 L A 0.0000
33 G A 0.0000
34 C A 0.0000
35 Q A -1.0129
36 L A 0.0000
37 S A -2.8715
38 R A -4.1446
39 E A -4.1501
40 E A -4.1769
41 I A -3.5615
42 E A -4.9526
43 K A -4.8395
44 V A 0.0000
45 K A -3.9396
46 E A -4.1072
47 D A -3.0610
48 P A -2.4970
49 R A -2.5853
50 L A -1.1512
51 I A 0.0000
52 N A -1.9588
53 L A -1.1340
54 G A 0.0000
55 L A -1.2187
56 E A -2.2015
57 A A 0.0000
58 R A 0.0000
59 Y A 0.0000
60 N A -1.8547
61 V A -0.9989
62 R A 0.0000
63 P A 0.0000
64 K A -1.6445
65 L A -1.4225
66 A A 0.0000
67 K A -2.1640
68 E A -3.4598
69 L A 0.0000
70 A A 0.0000
71 E A -4.3300
72 E A -3.7696
73 L A -2.9967
74 R A -3.8170
75 L A -2.7185
76 K A -2.8382
77 N A -2.2785
78 I A -0.5622
79 E A 0.0000
80 S A -1.5722
81 L A 0.0000
82 A A 0.0000
83 L A 0.0000
84 L A 0.0000
85 L A 0.0000
86 C A 0.0000
87 G A 0.0000
88 V A 0.0000
89 S A 0.0000
90 P A 0.0000
91 S A 0.0000
92 G A 0.0000
93 N A -0.2075
94 L A 0.0000
95 G A 0.0000
96 L A 0.0000
97 E A -0.5107
98 Y A 0.0000
99 T A 0.0000
100 A A -1.3849
101 K A -1.7621
102 V A 0.0000
103 N A -2.2566
104 G A -2.1812
105 N A -1.6997
106 L A 0.0000
107 E A -1.7118
108 L A 0.0000
109 A A 0.0000
110 L A 0.0000
111 V A 0.0000
112 M A 0.0000
113 W A 0.0000
114 F A 0.2671
115 E A 0.0000
116 D A 0.0000
117 N A 0.0000
118 R A -2.2552
119 Y A -1.2131
120 A A 0.0000
121 R A -2.4228
122 E A -2.7347
123 H A -2.1101
124 I A 0.0000
125 P A -2.8260
126 E A -3.2178
127 L A 0.0000
128 L A 0.0000
129 E A -4.1586
130 K A -3.1938
131 Y A 0.0000
132 S A 0.0000
133 K A -3.1615
134 G A -1.6779
135 I A -1.3272
136 Y A -1.6421
137 P A -1.8306
138 E A -3.2265
139 D A -3.7974
140 L A 0.0000
141 S A -2.7178
142 D A -2.2318
143 K A -1.3418
144 V A 0.0000
145 P A -0.8991
146 Y A -1.2405
147 K A -1.9114
148 G A -1.4208
149 I A 0.0000
150 E A -2.4740
151 I A -0.6724
152 S A -0.7290
153 L A -1.4065
154 K A -2.0224
155 L A -0.8703
156 V A 0.0000
157 L A -1.6972
158 K A -3.1026
159 P A 0.0000
160 I A 0.0000
161 E A -3.7129
162 E A -3.4467
163 G A 0.0000
164 I A 0.0000
165 E A -4.2207
166 I A -3.1762
167 R A -3.4524
168 E A -3.8671
169 K A -3.8371
170 D A -3.2346
171 P A -2.6543
172 S A -1.9616
173 K A -2.5772
174 L A -2.0450
175 E A -2.4498
176 P A -1.7973
177 L A -1.5790
178 L A -1.8818
179 S A -2.1925
180 K A -2.8271
181 L A 0.0000
182 E A -3.5077
183 K A -4.1631
184 E A -3.2610
185 V A -3.0901
186 E A -4.2895
187 E A -4.2998
188 L A 0.0000
189 S A -3.2787
190 K A -4.3319
191 E A -4.1421
192 V A 0.0000
193 K A -4.1895
194 K A -4.4378
195 L A -3.3513
196 S A -2.9583
197 E A -4.0587
198 E A -3.5282
199 N A 0.0000
200 V A -1.1525
201 G A -2.3424
202 D A -1.7756
203 T A -0.9264
204 I A -0.4913
205 K A -1.2610
206 Y A 0.3771
207 S A -0.1050
208 I A 0.0102
209 S A -0.4214
210 P A -0.7340
211 K A -1.8218
212 I A 0.0000
213 L A -0.9735
214 E A -1.9692
215 A A 0.0000
216 V A 0.0000
217 R A -2.2373
218 E A -1.9015
219 F A 0.0000
220 P A 0.0000
221 K A -1.9611
222 R A -1.9149
223 M A 0.0000
224 Y A 0.0000
225 E A -2.9667
226 E A -2.3507
227 G A 0.0000
228 E A -2.9145
229 K A -3.5192
230 I A -2.2848
231 A A 0.0000
232 K A -3.6317
233 E A -3.1200
234 A A -1.8572
235 G A -1.8878
236 L A -1.5045
237 S A -1.8105
238 E A -3.1566
239 E A -2.8442
240 D A -2.0021
241 V A 0.0000
242 K A -1.8587
243 A A 0.0000
244 I A 0.0000
245 A A 0.0000
246 L A 0.0000
247 L A 0.0000
248 V A 0.0000
249 A A 0.0000
250 T A 0.0000
251 V A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -1.1693
255 L A 0.0000
256 C A 0.0000
257 S A -0.3490
258 T A -0.3655
259 I A 0.0000
260 L A 0.0000
261 N A -0.3353
262 V A 0.3280
263 A A -0.6331
264 F A 0.0000
265 P A -0.8740
266 K A -1.9247
267 E A -2.1611
268 V A -0.2319
269 I A 0.0000
270 G A -0.9700
271 E A -0.6914
272 I A 0.0000
273 F A -0.0161
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.0422
278 L A 0.0000
279 L A 0.0000
280 M A -0.9677
281 K A -1.8745
282 E A -2.0232
283 Q A 0.0000
284 E A -2.3680
285 K A -2.9300
286 F A -2.3554
287 F A 0.0000
288 E A -2.9001
289 E A -3.4865
290 V A 0.0000
291 V A -2.7488
292 K A -3.9054
293 K A -4.0023
294 Y A -3.2331
295 K A -3.7832
296 E A -4.8496
297 E A -4.7896
298 L A -3.6800
299 K A -4.7117
300 K A -4.8387
301 K A -4.3766
302 E A -3.8271
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Laboratory of Theory of Biopolymers 2018