Project name: RADA16-I_12

Status: done

Started: 2026-06-25 06:35:19
Settings
Chain sequence(s) A: RADARADARADARADA
C: RADARADARADARADA
B: RADARADARADARADA
E: RADARADARADARADA
D: RADARADARADARADA
G: RADARADARADARADA
F: RADARADARADARADA
I: RADARADARADARADA
H: RADARADARADARADA
K: RADARADARADARADA
J: RADARADARADARADA
L: RADARADARADARADA
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:01)
Show buried residues

Minimal score value
-4.0122
Maximal score value
0.0
Average score
-2.7675
Total score value
-531.3587

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -2.7050
2 A A -1.9901
3 D A -2.9661
4 A A -2.3119
5 R A -2.9217
6 A A -1.9447
7 D A 0.0000
8 A A -1.8353
9 R A -2.1614
10 A A -1.9412
11 D A -2.2402
12 A A 0.0000
13 R A -2.4801
14 A A -2.2722
15 D A -2.4733
16 A A -1.5969
1 R B -2.2518
2 A B -2.1973
3 D B 0.0000
4 A B 0.0000
5 R B -2.5772
6 A B -2.2940
7 D B -2.2171
8 A B -2.6062
9 R B -3.0425
10 A B -2.8056
11 D B -2.9549
12 A B -2.6361
13 R B -3.6048
14 A B -2.9538
15 D B -2.6039
16 A B -2.0063
1 R C -2.5759
2 A C -2.0299
3 D C -2.7589
4 A C -2.6151
5 R C -2.7222
6 A C -2.5368
7 D C -3.4908
8 A C -3.4666
9 R C -3.7634
10 A C -3.3369
11 D C -3.8647
12 A C -3.2549
13 R C -3.6384
14 A C -2.5807
15 D C -2.8010
16 A C -1.7068
1 R D -2.9044
2 A D -2.4226
3 D D -3.2650
4 A D -2.7887
5 R D -3.4912
6 A D -2.9341
7 D D -3.1519
8 A D -2.3268
9 R D -3.3172
10 A D -2.6373
11 D D -2.3263
12 A D -2.3578
13 R D -2.8472
14 A D -1.9117
15 D D -1.6186
16 A D -1.4558
1 R E -2.5643
2 A E -2.4120
3 D E -3.4181
4 A E -2.1767
5 R E -2.9479
6 A E -2.8557
7 D E -3.1754
8 A E -2.5275
9 R E -2.7621
10 A E -2.8479
11 D E -3.3356
12 A E -2.6280
13 R E -3.1690
14 A E -2.3123
15 D E -2.8185
16 A E -1.6556
1 R F -3.3658
2 A F -2.3555
3 D F -3.1986
4 A F -3.2137
5 R F -3.9643
6 A F -2.7961
7 D F -2.5613
8 A F -3.2954
9 R F -3.6905
10 A F -2.9309
11 D F -3.4994
12 A F -3.1059
13 R F -3.4086
14 A F -2.8447
15 D F -2.7516
16 A F -1.6372
1 R G -2.7924
2 A G -2.4074
3 D G -3.2647
4 A G -2.8202
5 R G -3.5789
6 A G -3.0899
7 D G -3.4897
8 A G -2.6160
9 R G -3.2230
10 A G -3.6287
11 D G -3.8704
12 A G 0.0000
13 R G -3.4221
14 A G -3.0876
15 D G -2.7830
16 A G -2.1079
1 R H -1.9660
2 A H -1.7970
3 D H -2.3982
4 A H -1.8092
5 R H -2.4181
6 A H -2.7052
7 D H -2.9033
8 A H -2.2807
9 R H -2.7520
10 A H -3.1046
11 D H -3.4845
12 A H -2.8269
13 R H -3.3140
14 A H -2.6105
15 D H -2.9144
16 A H -1.7021
1 R I -2.7928
2 A I -2.4778
3 D I -3.4211
4 A I -2.9984
5 R I -3.7815
6 A I -3.0975
7 D I -3.3380
8 A I -2.8279
9 R I -3.5252
10 A I -2.7048
11 D I -2.5892
12 A I -2.7351
13 R I -3.1640
14 A I -2.3288
15 D I -3.1024
16 A I -1.9613
1 R J -2.8930
2 A J -3.1661
3 D J -3.8632
4 A J -3.1626
5 R J -4.0122
6 A J -3.4894
7 D J -3.7223
8 A J -3.3120
9 R J -3.7108
10 A J -3.2392
11 D J -3.9128
12 A J -3.0744
13 R J -3.2996
14 A J -2.4915
15 D J -2.7801
16 A J -1.6316
1 R K -2.7888
2 A K -2.5104
3 D K -3.5011
4 A K -3.0963
5 R K -3.8055
6 A K -3.2854
7 D K -3.5036
8 A K -3.2455
9 R K -3.6707
10 A K -2.8745
11 D K -2.9959
12 A K -2.7883
13 R K -3.0134
14 A K -2.1482
15 D K -2.6597
16 A K -1.4834
1 R L -2.7510
2 A L -2.4323
3 D L -3.2816
4 A L -3.0055
5 R L -3.5408
6 A L -3.0651
7 D L -3.7089
8 A L -3.0124
9 R L -3.3148
10 A L -3.0045
11 D L -3.5568
12 A L -3.1752
13 R L -3.4545
14 A L -2.4117
15 D L -2.8172
16 A L -1.9632
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Laboratory of Theory of Biopolymers 2018