Project name: 1C12

Status: done

Started: 2025-08-15 03:31:11
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Chain sequence(s) H: VKESEGGLFKPTATLTLTCTVSGFSLTTYGVSWVRQAPGNGLEWIGAIGESGSSYYANWAKSRSTITRNTNLNTVDLKMTSLTAADTATYFCARGDGDGYTFFNIWGPGTLVTVSS
L: AIDMTQTPSSVSAAVGGTVTINCQASEDIESYLAWYQQKPGQPPKLLIYDASDLASGVPSRFKGSGSGTEFTLTISGVESADAATYYCQEGYTSNNVDNAFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.4959
Maximal score value
1.2653
Average score
-0.5465
Total score value
-123.4991

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
4 V H -0.2530
5 K H -1.4028
6 E H 0.0000
7 S H -1.1951
8 E H -1.6313
9 G H -0.2717
11 G H 0.4411
12 L H 1.2653
13 F H 0.2967
14 K H -0.9444
15 P H -0.6160
16 T H -0.4711
17 A H -0.4326
18 T H -0.4550
19 L H 0.0000
20 T H -0.6658
21 L H 0.0000
22 T H -0.8464
23 C H 0.0000
24 T H -0.3255
25 V H 0.0000
26 S H -0.4749
27 G H -0.3549
28 F H 0.0357
29 S H -0.2132
30 L H 0.0000
35 T H -0.6461
36 T H -0.6086
37 Y H -0.8661
38 G H -0.9117
39 V H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.7278
45 A H -0.7057
46 P H -0.7737
47 G H -1.2911
48 N H -1.8543
49 G H -1.2141
50 L H 0.0000
51 E H -0.9269
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 A H 0.1071
56 I H 0.0000
57 G H -1.0939
58 E H -1.5113
59 S H -1.0026
63 G H -0.6963
64 S H -0.3668
65 S H -0.0242
66 Y H -0.1144
67 Y H -0.5785
68 A H 0.0000
69 N H -1.4462
70 W H -0.4056
71 A H 0.0000
72 K H -1.2139
74 S H -0.9023
75 R H -0.7634
76 S H 0.0000
77 T H -0.5308
78 I H 0.0000
79 T H -0.6243
80 R H -0.8905
81 N H -0.9506
82 T H -0.8530
83 N H -0.9257
84 L H 0.4895
85 N H -0.2683
86 T H 0.0000
87 V H 0.0000
88 D H -0.6874
89 L H 0.0000
90 K H -0.9140
91 M H 0.0000
92 T H -0.4586
93 S H -0.4491
94 L H 0.0000
95 T H -0.2801
96 A H -0.1374
97 A H 0.0304
98 D H 0.0000
99 T H 0.4105
100 A H 0.0000
101 T H 0.3916
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.0506
107 G H 0.0000
108 D H -0.8283
109 G H -1.2594
110 D H -2.1516
111 G H -0.9220
112 Y H 0.3242
113 T H -0.0749
114 F H 0.3024
115 F H 0.0000
116 N H -0.3501
117 I H 0.1859
118 W H 0.0000
119 G H 0.0000
120 P H -0.6339
121 G H -0.5676
122 T H 0.0000
123 L H 1.2017
124 V H 0.0000
125 T H 0.7213
126 V H 0.0000
127 S H -0.2055
128 S H -0.4337
1 A L -1.6517
2 I L 0.0000
3 D L -2.5064
4 M L 0.0000
5 T L -1.3117
6 Q L -1.0808
7 T L -0.6216
8 P L -0.5607
9 S L -0.7364
10 S L -0.7865
11 V L -0.4110
12 S L -0.7042
13 A L -0.4788
14 A L -0.3514
15 V L 0.5368
16 G L -0.3156
17 G L -0.2959
18 T L -0.2953
19 V L 0.0000
20 T L -0.3507
21 I L 0.0000
22 N L -1.0032
23 C L 0.0000
24 Q L -2.4382
25 A L 0.0000
26 S L -2.4804
27 E L -3.4524
28 D L -3.4959
29 I L 0.0000
36 E L -2.8198
37 S L -1.4763
38 Y L -0.4991
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.8890
44 Q L 0.0000
45 K L -1.2565
46 P L -1.0346
47 G L -1.2037
48 Q L -1.6690
49 P L -1.1164
50 P L 0.0000
51 K L -1.4580
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.4013
56 D L -1.2151
57 A L 0.0000
65 S L -1.4789
66 D L -1.7828
67 L L -0.8657
68 A L 0.0000
69 S L -0.4942
70 G L -0.4719
71 V L -0.4688
72 P L -0.5256
74 S L -0.7506
75 R L -1.0780
76 F L 0.0000
77 K L -2.0849
78 G L 0.0000
79 S L -1.1773
80 G L -1.2326
83 S L -1.7490
84 G L -2.4662
85 T L -2.4104
86 E L -2.1436
87 F L 0.0000
88 T L -0.9716
89 L L 0.0000
90 T L -0.8282
91 I L 0.0000
92 S L -0.8306
93 G L -0.6245
94 V L 0.0000
95 E L -0.9848
96 S L -0.6259
97 A L -0.1855
98 D L 0.0000
99 A L -0.7089
100 A L 0.0000
101 T L -0.8653
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 E L 0.0000
107 G L 0.4405
108 Y L 0.0624
109 T L -0.4967
110 S L -0.8420
112 N L -1.8473
113 N L -2.1303
114 V L 0.0000
115 D L -1.5078
116 N L -0.9451
117 A L -0.7114
118 F L -0.4806
119 G L 0.0000
120 G L -1.0458
121 G L -0.8634
122 T L 0.0000
123 K L -1.4033
124 L L 0.0000
125 E L -1.3034
126 I L -0.8296
127 K L -1.5155
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Laboratory of Theory of Biopolymers 2018