Project name: e5631c718d94d3f

Status: done

Started: 2026-05-21 11:28:00
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Chain sequence(s) A: GHKGHKS
C: GHKGHKS
B: GHKGHKS
E: GHKGHKS
D: GHKGHKS
G: GHKGHKS
F: GHKGHKS
I: GHKGHKS
H: GHKGHKS
K: GHKGHKS
J: GHKGHKS
M: GHKGHKS
L: GHKGHKS
O: GHKGHKS
N: GHKGHKS
Q: GHKGHKS
P: GHKGHKS
S: GHKGHKS
R: GHKGHKS
T: GHKGHKS
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:11:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:11:42)
Show buried residues

Minimal score value
-3.6348
Maximal score value
0.0
Average score
-1.5319
Total score value
-214.4647

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.6042
2 H A -1.8285
3 K A -2.4720
4 G A 0.0000
5 H A 0.0000
6 K A -2.2867
7 S A -1.3065
1 G B -1.7401
2 H B -2.0405
3 K B -2.5990
4 G B 0.0000
5 H B 0.0000
6 K B -2.1937
7 S B -1.2593
1 G C -1.9648
2 H C -2.5352
3 K C -3.2497
4 G C 0.0000
5 H C -2.7090
6 K C -2.4709
7 S C -1.3879
1 G D -1.7515
2 H D -2.9007
3 K D -3.6348
4 G D -2.7842
5 H D -2.8598
6 K D -2.7096
7 S D -1.3425
1 G E -1.4372
2 H E -2.1595
3 K E -3.0268
4 G E 0.0000
5 H E -2.5539
6 K E -2.7070
7 S E -1.3722
1 G F -1.7122
2 H F -2.0756
3 K F -2.8472
4 G F 0.0000
5 H F 0.0000
6 K F -2.3621
7 S F -1.3955
1 G G -1.5591
2 H G -1.7811
3 K G -2.3837
4 G G 0.0000
5 H G 0.0000
6 K G -2.0565
7 S G -1.1358
1 G H -1.4968
2 H H -1.7722
3 K H -2.3226
4 G H 0.0000
5 H H 0.0000
6 K H -1.9473
7 S H -1.1660
1 G I -1.5260
2 H I -1.8634
3 K I -2.4766
4 G I 0.0000
5 H I 0.0000
6 K I -1.9796
7 S I -1.1309
1 G J -1.5172
2 H J -1.8695
3 K J -2.3496
4 G J 0.0000
5 H J 0.0000
6 K J -1.8936
7 S J -1.1377
1 G K -1.6034
2 H K -2.0882
3 K K -2.7579
4 G K 0.0000
5 H K 0.0000
6 K K -2.3059
7 S K -1.2431
1 G L -1.9032
2 H L -2.6181
3 K L -3.3208
4 G L 0.0000
5 H L 0.0000
6 K L -2.6245
7 S L -1.5251
1 G M -1.8604
2 H M -2.6147
3 K M -3.4757
4 G M -2.6961
5 H M -2.8124
6 K M -2.8537
7 S M -1.4317
1 G N -1.5315
2 H N -2.1540
3 K N -3.2456
4 G N -2.5986
5 H N -2.7138
6 K N -2.8556
7 S N -1.4118
1 G O -1.5542
2 H O -2.0533
3 K O -2.8201
4 G O 0.0000
5 H O 0.0000
6 K O -2.4219
7 S O -1.4295
1 G P -1.3844
2 H P -1.6003
3 K P -1.9919
4 G P 0.0000
5 H P 0.0000
6 K P -1.8073
7 S P -1.0057
1 G Q -1.3736
2 H Q -1.6338
3 K Q -2.1141
4 G Q 0.0000
5 H Q 0.0000
6 K Q -1.4822
7 S Q -0.9273
1 G R -1.3634
2 H R -1.6060
3 K R -1.7834
4 G R 0.0000
5 H R 0.0000
6 K R -1.4326
7 S R -0.8961
1 G S -1.3580
2 H S -1.4565
3 K S -1.7435
4 G S 0.0000
5 H S 0.0000
6 K S -1.3519
7 S S -0.9055
1 G T -1.4557
2 H T -1.6629
3 K T -2.0934
4 G T 0.0000
5 H T 0.0000
6 K T -1.7551
7 S T -1.1098
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Laboratory of Theory of Biopolymers 2018