Project name: LYSOZYME_Unfolded

Status: done

Started: 2024-06-13 09:48:03
Settings
Chain sequence(s) X: KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
input PDB
Selected Chain(s) X
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with X chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.4671
Maximal score value
0.9043
Average score
-0.9946
Total score value
-127.3087

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K X -1.3817
2 V X 0.5101
3 F X -0.5121
4 G X -0.7872
5 R X -1.5296
6 C X -1.4876
7 E X -2.0276
8 L X 0.0000
9 A X 0.0000
10 A X -2.1523
11 A X -2.2224
12 M X 0.0000
13 K X -3.4671
14 R X -3.2644
15 H X -2.5384
16 G X -2.0436
17 L X 0.0000
18 D X -2.2799
19 N X -2.1227
20 Y X -1.4184
21 R X -2.2235
22 G X -1.7026
23 Y X -1.3026
24 S X 0.0000
25 L X 0.0000
26 G X 0.0000
27 N X 0.0000
28 W X 0.0000
29 V X 0.0000
30 C X 0.0000
31 A X 0.0000
32 A X 0.0000
33 K X -1.3853
34 F X -0.5736
35 E X -0.7457
36 S X -1.3346
37 N X -1.4942
38 F X 0.0000
39 N X -1.3808
40 T X 0.0000
41 Q X -1.7590
42 A X -1.1816
43 T X -1.2490
44 N X -2.0026
45 R X -3.0932
46 N X -2.7194
47 T X -2.2805
48 D X -2.6650
49 G X -2.1929
50 S X 0.0000
51 T X -1.3978
52 D X 0.0000
53 Y X 0.0000
54 G X 0.0000
55 I X 0.0000
56 L X 0.0000
57 Q X 0.0000
58 I X 0.0000
59 N X 0.0000
60 S X 0.0000
61 R X -1.6264
62 W X -0.4489
63 W X 0.0000
64 C X 0.0000
65 N X -1.9697
66 D X -1.9539
67 G X -1.8697
68 R X -2.4730
69 T X 0.0000
70 P X -1.6569
71 G X -1.5241
72 S X 0.0000
73 R X -2.1083
74 N X -1.1931
75 L X 0.1899
76 C X 0.0000
77 N X -1.2983
78 I X -0.7927
79 P X -0.9558
80 C X 0.0000
81 S X -0.6387
82 A X -0.4438
83 L X 0.0000
84 L X 0.0000
85 S X -1.1938
86 S X -1.0158
87 D X -2.2006
88 I X 0.0000
89 T X -1.0926
90 A X -0.8322
91 S X 0.0000
92 V X 0.0000
93 N X -1.8341
94 C X 0.0000
95 A X 0.0000
96 K X -1.8015
97 K X -2.1896
98 I X 0.0000
99 V X 0.0000
100 S X -2.1325
101 D X -2.7109
102 G X -1.9244
103 N X -2.0404
104 G X -1.2771
105 M X -0.3693
106 N X -0.4590
107 A X 0.0000
108 W X 0.0000
109 V X -0.0080
110 A X 0.0000
111 W X 0.0000
112 R X -2.2154
113 N X -2.8095
114 R X -3.0367
115 C X 0.0000
116 K X -3.0813
117 G X -1.3628
118 T X -0.8416
119 D X 0.0000
120 V X 0.9043
121 Q X -0.8269
122 A X -0.7412
123 W X -0.4598
124 I X 0.0000
125 R X -2.2293
126 G X -1.7210
127 C X -1.6282
128 R X -2.0053
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Laboratory of Theory of Biopolymers 2018