Project name: query_structure

Status: done

Started: 2026-03-16 20:33:10
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Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWRDLQYHTFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVGRHYTVYDSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-2.9672
Maximal score value
1.8565
Average score
-0.7546
Total score value
-70.1768

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.3988
2 P A 0.3120
3 A A -0.3759
4 P A -0.8163
5 K A -2.1074
6 N A -1.8804
7 L A -0.2081
8 V A 1.4054
9 V A 0.9810
10 S A -0.5385
11 R A -2.0063
12 V A -0.9871
13 T A -1.7370
14 E A -2.9672
15 D A -2.5781
16 S A -2.0096
17 A A 0.0000
18 R A -1.1157
19 L A 0.0000
20 S A -0.3328
21 W A 0.0000
22 R A -2.7519
23 D A -2.0716
24 L A 0.0000
25 Q A -1.2715
26 Y A 0.3376
27 H A -0.6381
28 T A -0.9978
29 F A -1.1895
30 D A -2.3614
31 S A -1.0858
32 F A 0.0000
33 L A 0.7243
34 I A 0.0000
35 Q A 0.3532
36 Y A 0.2222
37 Q A -1.0665
38 E A -2.1023
39 S A -1.6234
40 E A -2.7818
41 K A -2.4589
42 V A -0.1448
43 G A -1.1232
44 E A -1.5849
45 A A -0.4345
46 I A 0.7208
47 V A 1.4723
48 L A 1.0981
49 T A 0.3444
50 V A 0.0000
51 P A -1.1924
52 G A -1.5212
53 S A -1.4064
54 E A -1.8774
55 R A -1.7148
56 S A -0.9514
57 Y A -0.7809
58 D A -1.6866
59 L A 0.0000
60 T A -1.3208
61 G A -1.4452
62 L A 0.0000
63 K A -2.9663
64 P A -2.4948
65 G A -1.7836
66 T A -2.3789
67 E A -1.9010
68 Y A 0.0000
69 T A -0.0569
70 V A 0.0000
71 S A 0.1593
72 I A 0.0000
73 Y A -0.1474
74 G A 0.0000
75 V A 0.0000
76 G A 0.0000
77 R A -2.3264
78 H A -1.3309
79 Y A 0.2906
80 T A 0.1061
81 V A 0.7057
82 Y A 0.0872
83 D A -1.7401
84 S A -1.3798
85 N A -1.8445
86 P A -0.9844
87 L A -0.8994
88 S A 0.0450
89 A A 1.2729
90 I A 1.8565
91 F A 0.0000
92 T A -0.7298
93 T A -1.8606
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Laboratory of Theory of Biopolymers 2018