Project name: AB42

Status: done

Started: 2025-07-22 08:09:37
Settings
Chain sequence(s) A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:29)
Show buried residues

Minimal score value
-2.7404
Maximal score value
4.241
Average score
0.5424
Total score value
22.7795

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -2.1990
2 A A -1.2505
3 E A -1.7966
4 F A -0.0477
5 R A -2.2127
6 H A -2.7404
7 D A -2.7358
8 S A -1.5871
9 G A -0.7582
10 Y A 0.3028
11 E A -0.8889
12 V A 0.2716
13 H A -1.6110
14 H A -2.1012
15 Q A -1.7959
16 K A -1.0253
17 L A 2.0717
18 V A 3.2241
19 F A 3.7478
20 F A 2.8175
21 A A 0.8108
22 E A -1.1246
23 D A -1.7051
24 V A -0.2865
25 G A -1.1769
26 S A -1.2798
27 N A -1.4969
28 K A -1.6273
29 G A -0.2068
30 A A 0.6895
31 I A 2.4551
32 I A 2.3542
33 G A 2.1690
34 L A 3.8498
35 M A 4.1162
36 V A 4.2410
37 G A 3.3998
38 G A 3.5495
39 V A 4.2012
40 V A 4.1942
41 I A 3.8367
42 A A 2.1312
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Laboratory of Theory of Biopolymers 2018