Project name: query_structure

Status: done

Started: 2026-03-16 22:54:14
Settings
Chain sequence(s) A: APAAAACPPLSCCGLCPAAAACPPLSCCGL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-0.1574
Maximal score value
1.7921
Average score
0.7925
Total score value
23.7756

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.0349
2 P A -0.1574
3 A A 0.0881
4 A A 0.2012
5 A A 0.1893
6 A A 0.3906
7 C A 0.8684
8 P A 0.6672
9 P A 0.7758
10 L A 1.6975
11 S A 1.0485
12 C A 1.3037
13 C A 1.4450
14 G A 0.9613
15 L A 1.7451
16 C A 1.0480
17 P A 0.4069
18 A A 0.3578
19 A A 0.4542
20 A A 0.1543
21 A A 0.1808
22 C A 0.5628
23 P A 0.4346
24 P A 0.5701
25 L A 1.7921
26 S A 1.0025
27 C A 1.2883
28 C A 1.4459
29 G A 1.1537
30 L A 1.7342
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Laboratory of Theory of Biopolymers 2018