| Chain sequence(s) |
A: SSSVPTKLEVVAATPTSLLISWDAGYWFIDYYRITYGETGGNSPVQEFTVPGYSSTATISGLSPGVDYTITVYAYYDNYGWSPISINYRT
C: EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ B: SSVPTKLEVVAATPTSLLISWDAGYWFIDYYRITYGETGGNSPVQEFTVPGYSSTATISGLSPGVDYTITVYAYYDNYGWSPISINYRT D: EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:15)
[INFO] Main: Simulation completed successfully. (00:04:18)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | S | A | -0.2520 | |
| 3 | S | A | -0.3288 | |
| 4 | V | A | 0.0000 | |
| 5 | P | A | 0.0000 | |
| 6 | T | A | -1.3645 | |
| 7 | K | A | -2.3554 | |
| 8 | L | A | 0.0000 | |
| 9 | E | A | -1.8139 | |
| 10 | V | A | 0.0179 | |
| 11 | V | A | 1.3379 | |
| 12 | A | A | 0.7894 | |
| 13 | A | A | 0.2456 | |
| 14 | T | A | -0.2117 | |
| 15 | P | A | -0.8024 | |
| 16 | T | A | -0.7133 | |
| 17 | S | A | -0.3127 | |
| 18 | L | A | 0.0000 | |
| 19 | L | A | 0.6310 | |
| 20 | I | A | 0.0000 | |
| 21 | S | A | -0.5698 | |
| 22 | W | A | 0.0000 | |
| 23 | D | A | -1.3074 | |
| 24 | A | A | -0.1804 | |
| 25 | G | A | -0.0933 | |
| 26 | Y | A | 1.0236 | |
| 27 | W | A | 0.5309 | |
| 28 | F | A | 0.4669 | |
| 29 | I | A | 0.0000 | |
| 30 | D | A | -0.0718 | |
| 31 | Y | A | 0.5406 | |
| 32 | Y | A | 0.0000 | |
| 33 | R | A | -0.4278 | |
| 34 | I | A | 0.0000 | |
| 35 | T | A | 0.0000 | |
| 36 | Y | A | -0.5938 | |
| 37 | G | A | -1.2439 | |
| 38 | E | A | -2.4228 | |
| 39 | T | A | -1.6335 | |
| 40 | G | A | -1.4864 | |
| 41 | G | A | -1.7443 | |
| 42 | N | A | -1.8032 | |
| 43 | S | A | -1.1508 | |
| 44 | P | A | -0.5479 | |
| 45 | V | A | 0.0988 | |
| 46 | Q | A | -1.3599 | |
| 47 | E | A | -1.8107 | |
| 48 | F | A | -0.5473 | |
| 49 | T | A | -0.1379 | |
| 50 | V | A | 0.4175 | |
| 51 | P | A | 0.4174 | |
| 52 | G | A | 0.6974 | |
| 53 | Y | A | 1.0271 | |
| 54 | S | A | 0.5041 | |
| 55 | S | A | -0.0066 | |
| 56 | T | A | 0.0624 | |
| 57 | A | A | 0.0000 | |
| 58 | T | A | 0.0569 | |
| 59 | I | A | 0.0000 | |
| 60 | S | A | -0.4418 | |
| 61 | G | A | -0.6674 | |
| 62 | L | A | 0.0000 | |
| 63 | S | A | -0.9231 | |
| 64 | P | A | -0.9018 | |
| 65 | G | A | -0.9422 | |
| 66 | V | A | -1.0090 | |
| 67 | D | A | -1.8736 | |
| 68 | Y | A | 0.0000 | |
| 69 | T | A | -0.9810 | |
| 70 | I | A | 0.0000 | |
| 71 | T | A | -0.0935 | |
| 72 | V | A | 0.0000 | |
| 73 | Y | A | 0.1034 | |
| 74 | A | A | 0.0000 | |
| 75 | Y | A | -0.3476 | |
| 76 | Y | A | 0.0000 | |
| 77 | D | A | -1.4285 | |
| 78 | N | A | -1.6412 | |
| 79 | Y | A | -1.0246 | |
| 80 | G | A | -0.6767 | |
| 81 | W | A | 0.0000 | |
| 82 | S | A | -0.2479 | |
| 83 | P | A | -0.1418 | |
| 84 | I | A | -0.0044 | |
| 85 | S | A | -0.4412 | |
| 86 | I | A | -0.6204 | |
| 87 | N | A | -1.7706 | |
| 88 | Y | A | -1.4560 | |
| 89 | R | A | -2.3124 | |
| 90 | T | A | -1.1111 | |
| 2 | S | B | -0.2638 | |
| 3 | S | B | -0.3908 | |
| 4 | V | B | 0.0000 | |
| 5 | P | B | 0.0000 | |
| 6 | T | B | -1.3832 | |
| 7 | K | B | -2.3665 | |
| 8 | L | B | 0.0000 | |
| 9 | E | B | -1.7212 | |
| 10 | V | B | 0.1497 | |
| 11 | V | B | 1.5212 | |
| 12 | A | B | 0.8882 | |
| 13 | A | B | 0.2850 | |
| 14 | T | B | -0.2042 | |
| 15 | P | B | -0.8182 | |
| 16 | T | B | -0.7243 | |
| 17 | S | B | -0.3229 | |
| 18 | L | B | 0.0000 | |
| 19 | L | B | 0.7321 | |
| 20 | I | B | 0.0000 | |
| 21 | S | B | -0.5508 | |
| 22 | W | B | 0.0000 | |
| 23 | D | B | -1.3339 | |
| 24 | A | B | -0.2572 | |
| 25 | G | B | -0.1037 | |
| 26 | Y | B | 1.0235 | |
| 27 | W | B | 0.4046 | |
| 28 | F | B | 0.0000 | |
| 29 | I | B | 0.0000 | |
| 30 | D | B | -0.3798 | |
| 31 | Y | B | 0.5076 | |
| 32 | Y | B | 0.0000 | |
| 33 | R | B | -0.3637 | |
| 34 | I | B | 0.0000 | |
| 35 | T | B | 0.0000 | |
| 36 | Y | B | -0.4126 | |
| 37 | G | B | -0.8516 | |
| 38 | E | B | -1.6366 | |
| 39 | T | B | -1.1967 | |
| 40 | G | B | -1.2938 | |
| 41 | G | B | -1.4171 | |
| 42 | N | B | -1.6001 | |
| 43 | S | B | -0.9489 | |
| 44 | P | B | -0.4612 | |
| 45 | V | B | 0.1760 | |
| 46 | Q | B | -1.2731 | |
| 47 | E | B | -1.7869 | |
| 48 | F | B | -0.6365 | |
| 49 | T | B | -0.0765 | |
| 50 | V | B | 0.4062 | |
| 51 | P | B | 0.3285 | |
| 52 | G | B | 0.5094 | |
| 53 | Y | B | 1.1158 | |
| 54 | S | B | 0.5433 | |
| 55 | S | B | -0.0456 | |
| 56 | T | B | 0.0850 | |
| 57 | A | B | 0.0000 | |
| 58 | T | B | 0.0899 | |
| 59 | I | B | 0.0000 | |
| 60 | S | B | -0.4717 | |
| 61 | G | B | -0.6781 | |
| 62 | L | B | 0.0000 | |
| 63 | S | B | -0.8123 | |
| 64 | P | B | -0.9308 | |
| 65 | G | B | -1.0337 | |
| 66 | V | B | -0.8285 | |
| 67 | D | B | -1.6896 | |
| 68 | Y | B | 0.0000 | |
| 69 | T | B | -0.7406 | |
| 70 | I | B | 0.0000 | |
| 71 | T | B | -0.0796 | |
| 72 | V | B | 0.0000 | |
| 73 | Y | B | 0.1436 | |
| 74 | A | B | 0.0000 | |
| 75 | Y | B | -0.3845 | |
| 76 | Y | B | 0.0000 | |
| 77 | D | B | -1.5932 | |
| 78 | N | B | -1.6572 | |
| 79 | Y | B | -0.8705 | |
| 80 | G | B | -0.5715 | |
| 81 | W | B | 0.0000 | |
| 82 | S | B | -0.2266 | |
| 83 | P | B | -0.1289 | |
| 84 | I | B | -0.0300 | |
| 85 | S | B | -0.4868 | |
| 86 | I | B | -0.5867 | |
| 87 | N | B | -1.5265 | |
| 88 | Y | B | -1.3207 | |
| 89 | R | B | -2.2439 | |
| 90 | T | B | -1.1660 | |
| 20 | E | C | -1.9311 | |
| 21 | Y | C | -1.5201 | |
| 22 | I | C | 0.0000 | |
| 23 | K | C | -1.9472 | |
| 24 | L | C | 0.0000 | |
| 25 | K | C | -0.8600 | |
| 26 | V | C | 0.0000 | |
| 27 | I | C | -0.5182 | |
| 28 | G | C | 0.0000 | |
| 29 | Q | C | -2.3754 | |
| 30 | D | C | -2.4766 | |
| 31 | S | C | -1.6509 | |
| 32 | S | C | -0.8826 | |
| 33 | E | C | -0.3101 | |
| 34 | I | C | 0.4007 | |
| 35 | H | C | 0.0140 | |
| 36 | F | C | 0.0000 | |
| 37 | K | C | -1.1321 | |
| 38 | V | C | 0.0000 | |
| 39 | K | C | -1.7352 | |
| 40 | M | C | -1.9783 | |
| 41 | T | C | -1.5042 | |
| 42 | T | C | -1.6064 | |
| 43 | H | C | -2.7158 | |
| 44 | L | C | 0.0000 | |
| 45 | K | C | -2.8163 | |
| 46 | K | C | -2.5919 | |
| 47 | L | C | 0.0000 | |
| 48 | K | C | 0.0000 | |
| 49 | E | C | -2.5440 | |
| 50 | S | C | 0.0000 | |
| 51 | Y | C | 0.0000 | |
| 52 | A | C | 0.0000 | |
| 53 | Q | C | -2.2812 | |
| 54 | R | C | -1.8083 | |
| 55 | Q | C | -2.0936 | |
| 56 | G | C | -1.4459 | |
| 57 | V | C | -0.8749 | |
| 58 | P | C | -0.9369 | |
| 59 | M | C | -1.2636 | |
| 60 | N | C | -1.6929 | |
| 61 | S | C | -1.1978 | |
| 62 | L | C | -1.2074 | |
| 63 | R | C | -1.7529 | |
| 64 | F | C | 0.0000 | |
| 65 | L | C | 0.0000 | |
| 66 | F | C | 0.0000 | |
| 67 | E | C | -2.7091 | |
| 68 | G | C | -2.4414 | |
| 69 | Q | C | -3.0130 | |
| 70 | R | C | -3.0264 | |
| 71 | I | C | 0.0000 | |
| 72 | A | C | -1.7543 | |
| 73 | D | C | -2.4638 | |
| 74 | N | C | -2.5340 | |
| 75 | H | C | -2.3285 | |
| 76 | T | C | -2.2809 | |
| 77 | P | C | 0.0000 | |
| 78 | K | C | -3.1115 | |
| 79 | E | C | -2.9167 | |
| 80 | L | C | -1.7765 | |
| 81 | G | C | -1.9355 | |
| 82 | M | C | 0.0000 | |
| 83 | E | C | -3.5015 | |
| 84 | E | C | -3.6840 | |
| 85 | E | C | -3.4053 | |
| 86 | D | C | -2.5712 | |
| 87 | V | C | -1.0295 | |
| 88 | I | C | 0.0000 | |
| 89 | E | C | -1.4151 | |
| 90 | V | C | 0.0000 | |
| 91 | Y | C | -1.3739 | |
| 92 | Q | C | -2.0027 | |
| 93 | E | C | -1.8931 | |
| 94 | Q | C | -1.8661 | |
| 20 | E | D | -1.8804 | |
| 21 | Y | D | -1.5149 | |
| 22 | I | D | 0.0000 | |
| 23 | K | D | -1.9387 | |
| 24 | L | D | 0.0000 | |
| 25 | K | D | -0.6731 | |
| 26 | V | D | 0.0000 | |
| 27 | I | D | -0.4872 | |
| 28 | G | D | 0.0000 | |
| 29 | Q | D | -2.2704 | |
| 30 | D | D | -2.5226 | |
| 31 | S | D | -1.6038 | |
| 32 | S | D | -1.1150 | |
| 33 | E | D | -0.4677 | |
| 34 | I | D | 0.0000 | |
| 35 | H | D | 0.0000 | |
| 36 | F | D | 0.0000 | |
| 37 | K | D | -1.1732 | |
| 38 | V | D | 0.0000 | |
| 39 | K | D | -1.6235 | |
| 40 | M | D | -1.8922 | |
| 41 | T | D | -1.4017 | |
| 42 | T | D | -1.5139 | |
| 43 | H | D | -2.7129 | |
| 44 | L | D | 0.0000 | |
| 45 | K | D | -3.5089 | |
| 46 | K | D | -2.5835 | |
| 47 | L | D | 0.0000 | |
| 48 | K | D | -2.4718 | |
| 49 | E | D | -3.2360 | |
| 50 | S | D | 0.0000 | |
| 51 | Y | D | 0.0000 | |
| 52 | A | D | 0.0000 | |
| 53 | Q | D | -2.7866 | |
| 54 | R | D | -2.6757 | |
| 55 | Q | D | -1.8956 | |
| 56 | G | D | -1.3904 | |
| 57 | V | D | -1.0367 | |
| 58 | P | D | -1.0257 | |
| 59 | M | D | -1.2717 | |
| 60 | N | D | -1.6498 | |
| 61 | S | D | -1.3733 | |
| 62 | L | D | 0.0000 | |
| 63 | R | D | -1.5099 | |
| 64 | F | D | 0.0000 | |
| 65 | L | D | -1.2514 | |
| 66 | F | D | 0.0000 | |
| 67 | E | D | -2.4534 | |
| 68 | G | D | -2.0507 | |
| 69 | Q | D | -2.1288 | |
| 70 | R | D | -2.0834 | |
| 71 | I | D | 0.0000 | |
| 72 | A | D | -2.0791 | |
| 73 | D | D | -3.5919 | |
| 74 | N | D | -2.9904 | |
| 75 | H | D | -2.5342 | |
| 76 | T | D | -2.3926 | |
| 77 | P | D | 0.0000 | |
| 78 | K | D | -3.0930 | |
| 79 | E | D | -2.9292 | |
| 80 | L | D | -2.0789 | |
| 81 | G | D | -2.0979 | |
| 82 | M | D | 0.0000 | |
| 83 | E | D | -3.4860 | |
| 84 | E | D | -3.6110 | |
| 85 | E | D | -3.2652 | |
| 86 | D | D | -2.3529 | |
| 87 | V | D | -0.6448 | |
| 88 | I | D | 0.0000 | |
| 89 | E | D | -1.0637 | |
| 90 | V | D | 0.0000 | |
| 91 | Y | D | -1.0811 | |
| 92 | Q | D | -1.8471 | |
| 93 | E | D | -1.6642 | |
| 94 | Q | D | -2.0146 | |
| 95 | T | D | -1.4214 | |
| 96 | G | D | -0.9814 | |
| 97 | G | D | -0.9233 |