| Chain sequence(s) |
A: QVQLVESGGGVCQPGRSLRLSCAASGFTFSTYGMHWVRQAPGKGLEWVAVIWDDGSYKYYGDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDGITMVRGVMKDYFDYWGQGTLVTVSSGGGGSGGGGSGGGGSAIQLTQSPSSLSASVGDRVTITCRASQDISSALVWYQQKPGKAPKLLIYDASSLESGVPSRFSGSESGTDFTLTISSLQPEDFATYYCQQFNSYPLTFGGGTKVEIK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:39)
[INFO] Main: Simulation completed successfully. (00:01:40)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5285 | |
| 2 | V | A | -0.9852 | |
| 3 | Q | A | -1.1135 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.9621 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.1285 | |
| 8 | G | A | -0.7081 | |
| 9 | G | A | 0.1088 | |
| 10 | G | A | 0.9165 | |
| 11 | V | A | 1.5448 | |
| 12 | C | A | -0.3970 | |
| 13 | Q | A | -1.7528 | |
| 14 | P | A | -1.9349 | |
| 15 | G | A | -2.0785 | |
| 16 | R | A | -2.7508 | |
| 17 | S | A | -2.0803 | |
| 18 | L | A | -1.4369 | |
| 19 | R | A | -2.1519 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4203 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1457 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.9401 | |
| 26 | G | A | -1.0476 | |
| 27 | F | A | -0.3797 | |
| 28 | T | A | -0.2085 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.0734 | |
| 31 | T | A | -0.5381 | |
| 32 | Y | A | -0.0582 | |
| 33 | G | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | H | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -0.6553 | |
| 40 | A | A | -1.0543 | |
| 41 | P | A | -1.0165 | |
| 42 | G | A | -1.4608 | |
| 43 | K | A | -2.2832 | |
| 44 | G | A | -1.4240 | |
| 45 | L | A | 0.0000 | |
| 46 | E | A | -0.9858 | |
| 47 | W | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | V | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | W | A | -0.4706 | |
| 53 | D | A | -1.4556 | |
| 54 | D | A | -2.1612 | |
| 55 | G | A | -1.2790 | |
| 56 | S | A | -0.5509 | |
| 57 | Y | A | 0.3123 | |
| 58 | K | A | -0.0824 | |
| 59 | Y | A | 0.0673 | |
| 60 | Y | A | -0.7980 | |
| 61 | G | A | 0.0000 | |
| 62 | D | A | -2.7470 | |
| 63 | S | A | -2.0784 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5452 | |
| 66 | G | A | -1.7381 | |
| 67 | R | A | -1.5608 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8708 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4309 | |
| 72 | R | A | -1.3503 | |
| 73 | D | A | -1.9492 | |
| 74 | N | A | -2.2722 | |
| 75 | S | A | -1.7241 | |
| 76 | K | A | -2.4818 | |
| 77 | N | A | -1.8545 | |
| 78 | T | A | 0.0000 | |
| 79 | L | A | 0.0000 | |
| 80 | Y | A | -0.6058 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2302 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.7781 | |
| 85 | S | A | -1.6735 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -2.4203 | |
| 88 | A | A | -1.7751 | |
| 89 | E | A | -2.3537 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.3196 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 0.7235 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.0000 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | R | A | 0.0000 | |
| 99 | D | A | 0.0000 | |
| 100 | G | A | 0.0000 | |
| 101 | I | A | 1.3645 | |
| 102 | T | A | 1.1100 | |
| 103 | M | A | 1.2959 | |
| 104 | V | A | 0.0000 | |
| 105 | R | A | -1.2630 | |
| 106 | G | A | -0.1508 | |
| 107 | V | A | 1.3288 | |
| 108 | M | A | 1.5570 | |
| 109 | K | A | 0.7187 | |
| 110 | D | A | 0.0000 | |
| 111 | Y | A | 0.2901 | |
| 112 | F | A | 0.0000 | |
| 113 | D | A | -0.0896 | |
| 114 | Y | A | -0.0091 | |
| 115 | W | A | -0.3746 | |
| 116 | G | A | 0.0000 | |
| 117 | Q | A | -1.3450 | |
| 118 | G | A | 0.0000 | |
| 119 | T | A | 0.6063 | |
| 120 | L | A | 1.7448 | |
| 121 | V | A | 0.0000 | |
| 122 | T | A | 0.4825 | |
| 123 | V | A | 0.0000 | |
| 124 | S | A | -0.8457 | |
| 125 | S | A | -1.0554 | |
| 126 | G | A | -0.9528 | |
| 127 | G | A | -1.0901 | |
| 128 | G | A | -1.1766 | |
| 129 | G | A | -1.1784 | |
| 130 | S | A | -0.9397 | |
| 131 | G | A | -1.5079 | |
| 132 | G | A | -1.1871 | |
| 133 | G | A | -1.3849 | |
| 134 | G | A | -1.4110 | |
| 135 | S | A | -1.0373 | |
| 136 | G | A | -1.4947 | |
| 137 | G | A | -1.4587 | |
| 138 | G | A | -1.2940 | |
| 139 | G | A | -1.4401 | |
| 140 | S | A | -0.7623 | |
| 141 | A | A | -0.9308 | |
| 142 | I | A | 0.0000 | |
| 143 | Q | A | -1.7739 | |
| 144 | L | A | -1.3643 | |
| 145 | T | A | -1.2453 | |
| 146 | Q | A | -1.0300 | |
| 147 | S | A | -0.8506 | |
| 148 | P | A | -0.6070 | |
| 149 | S | A | -0.8163 | |
| 150 | S | A | -0.9705 | |
| 151 | L | A | -0.7209 | |
| 152 | S | A | -1.0606 | |
| 153 | A | A | -1.0125 | |
| 154 | S | A | -0.7604 | |
| 155 | V | A | 0.1250 | |
| 156 | G | A | -0.8018 | |
| 157 | D | A | -1.6799 | |
| 158 | R | A | -2.3185 | |
| 159 | V | A | 0.0000 | |
| 160 | T | A | -0.6316 | |
| 161 | I | A | 0.0000 | |
| 162 | T | A | -0.8904 | |
| 163 | C | A | 0.0000 | |
| 164 | R | A | -2.8520 | |
| 165 | A | A | 0.0000 | |
| 166 | S | A | -1.8865 | |
| 167 | Q | A | -2.4194 | |
| 168 | D | A | -2.4916 | |
| 169 | I | A | 0.0000 | |
| 170 | S | A | -1.3653 | |
| 171 | S | A | -0.9415 | |
| 172 | A | A | 0.0000 | |
| 173 | L | A | 0.0000 | |
| 174 | V | A | 0.0000 | |
| 175 | W | A | 0.0000 | |
| 176 | Y | A | 0.0000 | |
| 177 | Q | A | 0.0000 | |
| 178 | Q | A | 0.0000 | |
| 179 | K | A | -1.8099 | |
| 180 | P | A | -1.1928 | |
| 181 | G | A | -1.7183 | |
| 182 | K | A | -2.6984 | |
| 183 | A | A | -1.7415 | |
| 184 | P | A | 0.0000 | |
| 185 | K | A | -1.8055 | |
| 186 | L | A | 0.0000 | |
| 187 | L | A | 0.0000 | |
| 188 | I | A | 0.0000 | |
| 189 | Y | A | 0.0202 | |
| 190 | D | A | -0.3027 | |
| 191 | A | A | 0.0000 | |
| 192 | S | A | -0.5885 | |
| 193 | S | A | -0.1371 | |
| 194 | L | A | 0.0402 | |
| 195 | E | A | -0.6070 | |
| 196 | S | A | -0.5631 | |
| 197 | G | A | -0.6574 | |
| 198 | V | A | 0.0000 | |
| 199 | P | A | -0.4654 | |
| 200 | S | A | -0.4972 | |
| 201 | R | A | -0.7845 | |
| 202 | F | A | 0.0000 | |
| 203 | S | A | -0.3347 | |
| 204 | G | A | -0.5505 | |
| 205 | S | A | -1.1565 | |
| 206 | E | A | -2.0801 | |
| 207 | S | A | -1.4926 | |
| 208 | G | A | -1.7593 | |
| 209 | T | A | -2.1162 | |
| 210 | D | A | -2.1722 | |
| 211 | F | A | 0.0000 | |
| 212 | T | A | -0.9383 | |
| 213 | L | A | 0.0000 | |
| 214 | T | A | -0.6010 | |
| 215 | I | A | 0.0000 | |
| 216 | S | A | -1.3340 | |
| 217 | S | A | -1.1318 | |
| 218 | L | A | 0.0000 | |
| 219 | Q | A | -0.6901 | |
| 220 | P | A | -1.0165 | |
| 221 | E | A | -1.6780 | |
| 222 | D | A | 0.0000 | |
| 223 | F | A | -0.5287 | |
| 224 | A | A | 0.0000 | |
| 225 | T | A | -0.8424 | |
| 226 | Y | A | 0.0000 | |
| 227 | Y | A | 0.0000 | |
| 228 | C | A | 0.0000 | |
| 229 | Q | A | 0.0000 | |
| 230 | Q | A | 0.0000 | |
| 231 | F | A | 0.0000 | |
| 232 | N | A | -0.2613 | |
| 233 | S | A | -0.1758 | |
| 234 | Y | A | 0.2939 | |
| 235 | P | A | -0.2421 | |
| 236 | L | A | 0.0000 | |
| 237 | T | A | -0.3547 | |
| 238 | F | A | -0.2831 | |
| 239 | G | A | 0.0000 | |
| 240 | G | A | -1.1595 | |
| 241 | G | A | 0.0000 | |
| 242 | T | A | 0.0000 | |
| 243 | K | A | -1.5899 | |
| 244 | V | A | 0.0000 | |
| 245 | E | A | -1.3649 | |
| 246 | I | A | -0.7754 | |
| 247 | K | A | -1.5325 |