Project name: CMET

Status: done

Started: 2026-06-27 04:11:16
Settings
Chain sequence(s) A: QVQLVESGGGVCQPGRSLRLSCAASGFTFSTYGMHWVRQAPGKGLEWVAVIWDDGSYKYYGDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDGITMVRGVMKDYFDYWGQGTLVTVSSGGGGSGGGGSGGGGSAIQLTQSPSSLSASVGDRVTITCRASQDISSALVWYQQKPGKAPKLLIYDASSLESGVPSRFSGSESGTDFTLTISSLQPEDFATYYCQQFNSYPLTFGGGTKVEIK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:40)
Show buried residues

Minimal score value
-2.852
Maximal score value
1.7448
Average score
-0.6408
Total score value
-158.2843

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5285
2 V A -0.9852
3 Q A -1.1135
4 L A 0.0000
5 V A 0.9621
6 E A 0.0000
7 S A -0.1285
8 G A -0.7081
9 G A 0.1088
10 G A 0.9165
11 V A 1.5448
12 C A -0.3970
13 Q A -1.7528
14 P A -1.9349
15 G A -2.0785
16 R A -2.7508
17 S A -2.0803
18 L A -1.4369
19 R A -2.1519
20 L A 0.0000
21 S A -0.4203
22 C A 0.0000
23 A A -0.1457
24 A A 0.0000
25 S A -0.9401
26 G A -1.0476
27 F A -0.3797
28 T A -0.2085
29 F A 0.0000
30 S A -1.0734
31 T A -0.5381
32 Y A -0.0582
33 G A 0.0000
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.6553
40 A A -1.0543
41 P A -1.0165
42 G A -1.4608
43 K A -2.2832
44 G A -1.4240
45 L A 0.0000
46 E A -0.9858
47 W A 0.0000
48 V A 0.0000
49 A A 0.0000
50 V A 0.0000
51 I A 0.0000
52 W A -0.4706
53 D A -1.4556
54 D A -2.1612
55 G A -1.2790
56 S A -0.5509
57 Y A 0.3123
58 K A -0.0824
59 Y A 0.0673
60 Y A -0.7980
61 G A 0.0000
62 D A -2.7470
63 S A -2.0784
64 V A 0.0000
65 K A -2.5452
66 G A -1.7381
67 R A -1.5608
68 F A 0.0000
69 T A -0.8708
70 I A 0.0000
71 S A -0.4309
72 R A -1.3503
73 D A -1.9492
74 N A -2.2722
75 S A -1.7241
76 K A -2.4818
77 N A -1.8545
78 T A 0.0000
79 L A 0.0000
80 Y A -0.6058
81 L A 0.0000
82 Q A -1.2302
83 M A 0.0000
84 N A -1.7781
85 S A -1.6735
86 L A 0.0000
87 R A -2.4203
88 A A -1.7751
89 E A -2.3537
90 D A 0.0000
91 T A -0.3196
92 A A 0.0000
93 V A 0.7235
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 R A 0.0000
99 D A 0.0000
100 G A 0.0000
101 I A 1.3645
102 T A 1.1100
103 M A 1.2959
104 V A 0.0000
105 R A -1.2630
106 G A -0.1508
107 V A 1.3288
108 M A 1.5570
109 K A 0.7187
110 D A 0.0000
111 Y A 0.2901
112 F A 0.0000
113 D A -0.0896
114 Y A -0.0091
115 W A -0.3746
116 G A 0.0000
117 Q A -1.3450
118 G A 0.0000
119 T A 0.6063
120 L A 1.7448
121 V A 0.0000
122 T A 0.4825
123 V A 0.0000
124 S A -0.8457
125 S A -1.0554
126 G A -0.9528
127 G A -1.0901
128 G A -1.1766
129 G A -1.1784
130 S A -0.9397
131 G A -1.5079
132 G A -1.1871
133 G A -1.3849
134 G A -1.4110
135 S A -1.0373
136 G A -1.4947
137 G A -1.4587
138 G A -1.2940
139 G A -1.4401
140 S A -0.7623
141 A A -0.9308
142 I A 0.0000
143 Q A -1.7739
144 L A -1.3643
145 T A -1.2453
146 Q A -1.0300
147 S A -0.8506
148 P A -0.6070
149 S A -0.8163
150 S A -0.9705
151 L A -0.7209
152 S A -1.0606
153 A A -1.0125
154 S A -0.7604
155 V A 0.1250
156 G A -0.8018
157 D A -1.6799
158 R A -2.3185
159 V A 0.0000
160 T A -0.6316
161 I A 0.0000
162 T A -0.8904
163 C A 0.0000
164 R A -2.8520
165 A A 0.0000
166 S A -1.8865
167 Q A -2.4194
168 D A -2.4916
169 I A 0.0000
170 S A -1.3653
171 S A -0.9415
172 A A 0.0000
173 L A 0.0000
174 V A 0.0000
175 W A 0.0000
176 Y A 0.0000
177 Q A 0.0000
178 Q A 0.0000
179 K A -1.8099
180 P A -1.1928
181 G A -1.7183
182 K A -2.6984
183 A A -1.7415
184 P A 0.0000
185 K A -1.8055
186 L A 0.0000
187 L A 0.0000
188 I A 0.0000
189 Y A 0.0202
190 D A -0.3027
191 A A 0.0000
192 S A -0.5885
193 S A -0.1371
194 L A 0.0402
195 E A -0.6070
196 S A -0.5631
197 G A -0.6574
198 V A 0.0000
199 P A -0.4654
200 S A -0.4972
201 R A -0.7845
202 F A 0.0000
203 S A -0.3347
204 G A -0.5505
205 S A -1.1565
206 E A -2.0801
207 S A -1.4926
208 G A -1.7593
209 T A -2.1162
210 D A -2.1722
211 F A 0.0000
212 T A -0.9383
213 L A 0.0000
214 T A -0.6010
215 I A 0.0000
216 S A -1.3340
217 S A -1.1318
218 L A 0.0000
219 Q A -0.6901
220 P A -1.0165
221 E A -1.6780
222 D A 0.0000
223 F A -0.5287
224 A A 0.0000
225 T A -0.8424
226 Y A 0.0000
227 Y A 0.0000
228 C A 0.0000
229 Q A 0.0000
230 Q A 0.0000
231 F A 0.0000
232 N A -0.2613
233 S A -0.1758
234 Y A 0.2939
235 P A -0.2421
236 L A 0.0000
237 T A -0.3547
238 F A -0.2831
239 G A 0.0000
240 G A -1.1595
241 G A 0.0000
242 T A 0.0000
243 K A -1.5899
244 V A 0.0000
245 E A -1.3649
246 I A -0.7754
247 K A -1.5325
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018