Project name: Lad-EAAAKEAAAK-Cutinase

Status: done

Started: 2025-06-30 19:20:55
Settings
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGLTIEDYYMHWVRQAPGQGLEWMGWIDPENGDTEYGPKFQGRVTMTRDTSINTAYMELSRLRSDDTAVYYCAVHNAHYGTWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCEAAAKEAAAKGLPTSNPAQELEARQLGRTTRDDLINGNSASCADVIFIYARGSTETGNLGTLGPSIASNLESAFGKDGVWIQGVGGAYRATLGDNALPRGTSSAAIREMLGLFQQANTKCPDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAPHLAYGPDARGPAPEFLIEKVRAVRGSA
B: DVVMTQSPLSLPVTLGQPASISCRSSQSLLHSSGNTYLEWYQQRPGQSPRPLIYKISTRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHVPYTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:10:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:58)
Show buried residues

Minimal score value
-3.53
Maximal score value
2.1621
Average score
-0.6854
Total score value
-457.1869

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5495
2 V A -1.0672
3 Q A -1.4401
4 L A 0.0000
5 V A 0.1751
6 Q A 0.0000
7 S A -0.5385
8 G A -0.9583
9 A A -0.9576
10 E A -1.5513
11 V A -0.8876
12 K A -1.6518
13 K A -2.5324
14 P A -2.3509
15 G A -1.9685
16 A A -1.5940
17 S A -1.6754
18 V A 0.0000
19 K A -1.9880
20 V A 0.0000
21 S A -0.5145
22 C A 0.0000
23 K A -0.4854
24 A A 0.0000
25 S A -0.7714
26 G A -1.0717
27 L A -0.8573
28 T A -0.8570
29 I A 0.0000
30 E A -2.7699
31 D A -2.4263
32 Y A -1.1586
33 Y A -0.4693
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.5845
40 A A -0.9869
41 P A -0.9972
42 G A -1.2131
43 Q A -1.7340
44 G A -1.0911
45 L A 0.0000
46 E A -0.6665
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 W A -0.2560
51 I A 0.0000
52 D A -2.1117
53 P A 0.0000
54 E A -3.5300
55 N A -3.0061
56 G A -2.4517
57 D A -2.6466
58 T A -1.2737
59 E A -0.8510
60 Y A -0.6659
61 G A 0.0000
62 P A -1.5758
63 K A -2.2358
64 F A 0.0000
65 Q A -2.1007
66 G A -1.6282
67 R A -1.6272
68 V A 0.0000
69 T A -0.7389
70 M A 0.0000
71 T A -0.7527
72 R A -1.3641
73 D A -0.8625
74 T A -0.7358
75 S A 0.3296
76 I A 1.2933
77 N A -0.0637
78 T A 0.0000
79 A A 0.0000
80 Y A -0.6552
81 M A 0.0000
82 E A -1.2462
83 L A 0.0000
84 S A -1.7663
85 R A -2.6887
86 L A 0.0000
87 R A -3.2065
88 S A -2.2323
89 D A -2.4758
90 D A 0.0000
91 T A -0.9362
92 A A 0.0000
93 V A 0.2308
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 H A 0.1174
100 N A 0.0000
101 A A -0.1494
102 H A -0.5376
103 Y A 0.7516
104 G A 0.1625
105 T A 0.0000
106 W A 0.4060
107 F A 0.0000
108 A A 0.0796
109 Y A -0.1848
110 W A -0.4010
111 G A 0.0000
112 Q A -1.3040
113 G A -0.5218
114 T A 0.0000
115 L A -0.1478
116 V A 0.0000
117 T A -0.9671
118 V A 0.0000
119 S A -1.1578
120 S A -0.9471
121 A A -0.5947
122 S A -0.6698
123 T A -0.7250
124 K A -1.1502
125 G A -1.3612
126 P A 0.0000
127 S A -0.4123
128 V A 0.0000
129 F A 0.0000
130 P A -1.2251
131 L A 0.0000
132 A A -1.1235
133 P A 0.0000
134 S A -0.9542
135 S A -0.6880
136 K A -1.2512
137 S A 0.0000
138 T A -0.7371
139 S A -0.7153
140 G A -0.7805
141 G A -0.8200
142 T A -0.5721
143 A A 0.0000
144 A A 0.0000
145 L A 0.0000
146 G A 0.0000
147 C A 0.0000
148 L A 0.0000
149 V A 0.0000
150 K A 0.0000
151 D A -0.3609
152 Y A 0.0000
153 F A 0.0000
154 P A 0.0000
155 E A -0.4605
156 P A -0.7760
157 V A -0.7895
158 T A -0.7529
159 V A -0.2704
160 S A -0.3941
161 W A 0.0000
162 N A -0.6095
163 S A -0.5722
164 G A -0.4692
165 A A -0.2142
166 L A 0.0443
167 T A -0.1436
168 S A -0.1545
169 G A -0.1684
170 V A 0.2055
171 H A -0.1972
172 T A 0.0147
173 F A 0.0000
174 P A -0.3039
175 A A 0.1966
176 V A 0.4502
177 L A 1.1997
178 Q A 0.3039
179 S A -0.0585
180 S A -0.2068
181 G A 0.0392
182 L A 0.1621
183 Y A 0.5001
184 S A 0.0000
185 L A 0.0000
186 S A 0.0000
187 S A 0.0000
188 V A 0.0000
189 V A 0.0000
190 T A -0.1126
191 V A 0.0000
192 P A -0.5533
193 S A -0.1904
194 S A 0.3580
195 S A -0.1677
196 L A -0.4480
197 G A -0.1973
198 T A -0.1403
199 Q A -1.1223
200 T A -1.0019
201 Y A 0.0000
202 I A -0.9476
203 C A 0.0000
204 N A -1.3635
205 V A 0.0000
206 N A -2.4197
207 H A 0.0000
208 K A -3.0634
209 P A -1.8916
210 S A -1.9585
211 N A -2.6542
212 T A -2.2066
213 K A -2.8176
214 V A -1.4635
215 D A -2.0134
216 K A -1.7352
217 K A -2.0641
218 V A 0.0000
219 E A -2.6778
220 P A -1.6642
221 K A -2.0053
222 S A -1.2186
223 C A -0.8581
224 E A -2.1657
225 A A -1.8030
226 A A -1.9062
227 A A -1.8274
228 K A -3.0479
229 E A -3.2264
230 A A -1.8842
231 A A -1.5061
232 A A -1.7505
233 K A -2.1139
234 G A -0.7808
235 L A 0.4843
236 P A -0.1508
237 T A -0.3369
238 S A -1.0745
239 N A -1.5095
240 P A -1.4267
241 A A -1.1649
242 Q A -1.8581
243 E A -2.2927
244 L A -0.8984
245 E A -2.1921
246 A A -1.9038
247 R A -2.7375
248 Q A -2.3634
249 L A -1.0914
250 G A -2.0136
251 R A -2.7462
252 T A 0.0000
253 T A -1.1206
254 R A -0.9921
255 D A -0.6739
256 D A -0.8811
257 L A 0.0000
258 I A 0.5465
259 N A -1.0485
260 G A -1.0183
261 N A -1.5201
262 S A -1.0793
263 A A -0.5474
264 S A -1.0098
265 C A -1.2489
266 A A 0.0000
267 D A -2.2259
268 V A 0.0000
269 I A 0.0000
270 F A 0.0000
271 I A 0.0000
272 Y A 0.0000
273 A A 0.0000
274 R A 0.0000
275 G A 0.0000
276 S A -0.0992
277 T A -0.4270
278 E A -0.7719
279 T A -0.3537
280 G A -0.5341
281 N A 0.0000
282 L A 0.0000
283 G A 0.0000
284 T A -0.0156
285 L A 0.0000
286 G A 0.0000
287 P A -1.0922
288 S A -1.1096
289 I A 0.0000
290 A A 0.0000
291 S A -1.1959
292 N A -1.2181
293 L A 0.0000
294 E A 0.0000
295 S A -0.6948
296 A A -0.4868
297 F A -0.8674
298 G A -1.5302
299 K A -2.6401
300 D A -2.8735
301 G A -1.8608
302 V A 0.0000
303 W A -0.9436
304 I A 0.0000
305 Q A 0.0000
306 G A 0.0000
307 V A 0.0000
308 G A -0.9747
309 G A -1.0130
310 A A -1.2179
311 Y A 0.0000
312 R A -1.8579
313 A A 0.0000
314 T A -0.1589
315 L A 0.8807
316 G A 0.2133
317 D A -0.2603
318 N A 0.2711
319 A A 0.3236
320 L A 0.1113
321 P A -0.3200
322 R A -0.7083
323 G A 0.0000
324 T A 0.0000
325 S A -0.7966
326 S A -0.8189
327 A A -1.0855
328 A A 0.0000
329 I A 0.0000
330 R A -2.2643
331 E A -1.6675
332 M A 0.0000
333 L A -1.4894
334 G A -1.3525
335 L A 0.0000
336 F A 0.0000
337 Q A -1.6769
338 Q A -0.8690
339 A A 0.0000
340 N A -1.3376
341 T A -1.0497
342 K A -1.0338
343 C A 0.0000
344 P A -1.6706
345 D A -2.3377
346 A A 0.0000
347 T A 0.0000
348 L A 0.0000
349 I A 0.0000
350 A A 0.0000
351 G A 0.0000
352 G A 0.0000
353 Y A 0.0000
354 S A 0.0000
355 Q A 0.0000
356 G A 0.0000
357 A A 0.0000
358 A A 0.0000
359 L A 0.0000
360 A A 0.0000
361 A A 0.0000
362 A A 0.0000
363 S A 0.0000
364 I A 0.0000
365 E A -1.9301
366 D A -2.4073
367 L A 0.0000
368 D A -2.6069
369 S A -2.0472
370 A A -1.2990
371 I A 0.0000
372 R A 0.0000
373 D A -2.3215
374 K A -1.4331
375 I A 0.0000
376 A A 0.0000
377 G A 0.0000
378 T A 0.0000
379 V A 0.0000
380 L A 0.0000
381 F A 0.0000
382 G A 0.0000
383 Y A 0.0000
384 T A 0.0000
385 K A -1.1180
386 N A -1.1890
387 L A -0.8923
388 Q A -1.6878
389 N A -2.0063
390 R A -2.5760
391 G A -1.7794
392 R A -2.7197
393 I A 0.0000
394 P A -1.7558
395 N A -1.9506
396 Y A 0.0000
397 P A -1.5460
398 A A -1.6383
399 D A -2.3051
400 R A -1.5867
401 T A 0.0000
402 K A -0.9257
403 V A -0.1534
404 F A 0.0000
405 C A 0.0652
406 N A -0.0889
407 T A -0.3118
408 G A -0.2360
409 D A 0.0000
410 L A 1.1094
411 V A 0.0000
412 C A 0.0000
413 T A 0.0328
414 G A 0.0651
415 S A 0.9614
416 L A 1.5792
417 I A 1.8912
418 V A 2.1621
419 A A 1.1848
420 A A 0.6748
421 P A 0.5758
422 H A 0.0000
423 L A 1.7197
424 A A 0.6326
425 Y A 0.0000
426 G A -0.4875
427 P A -1.0673
428 D A -1.2516
429 A A 0.0000
430 R A -2.4653
431 G A -1.7021
432 P A -1.2700
433 A A 0.0000
434 P A 0.0000
435 E A -2.5634
436 F A -1.5916
437 L A 0.0000
438 I A -1.6489
439 E A -2.5315
440 K A -1.7380
441 V A 0.0000
442 R A -1.6667
443 A A -0.6175
444 V A 0.5502
445 R A -0.7096
446 G A -0.8762
447 S A -0.8745
448 A A -0.4489
1 D B -1.2734
2 V B 0.0000
3 V B 0.7161
4 M B 0.0000
5 T B -0.4024
6 Q B 0.0000
7 S B -0.1549
8 P B 0.4175
9 L B 1.2217
10 S B 0.3588
11 L B 0.0616
12 P B -0.5753
13 V B 0.0000
14 T B -1.0499
15 L B -0.6533
16 G B -1.2634
17 Q B -1.7337
18 P B -1.8630
19 A B 0.0000
20 S B -0.8421
21 I B 0.0000
22 S B -0.9297
23 C B 0.0000
24 R B -2.2696
25 S B 0.0000
26 S B -0.8789
27 Q B -1.1959
28 S B -0.6586
29 L B 0.0000
30 L B 0.8455
31 H B -0.1012
32 S B -0.3642
33 S B -0.5058
34 G B -0.5116
35 N B -0.4381
36 T B 0.0000
37 Y B 0.0505
38 L B 0.0000
39 E B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 Q B 0.0000
43 Q B 0.0000
44 R B -1.9524
45 P B -1.3418
46 G B -1.5749
47 Q B -2.2605
48 S B -1.6156
49 P B 0.0000
50 R B -2.0371
51 P B 0.0000
52 L B 0.0000
53 I B 0.0000
54 Y B -0.1723
55 K B -0.5665
56 I B -0.4407
57 S B -0.6344
58 T B -0.5920
59 R B -1.4784
60 F B 0.0000
61 S B -0.6397
62 G B -0.8863
63 V B -1.1071
64 P B -1.2796
65 D B -2.3766
66 R B -2.1273
67 F B 0.0000
68 S B -1.3784
69 G B 0.0000
70 S B -0.8789
71 G B -0.9921
72 S B -0.6489
73 G B -0.5835
74 T B -1.3634
75 D B -2.0834
76 F B 0.0000
77 T B -1.1195
78 L B 0.0000
79 K B -2.0379
80 I B 0.0000
81 S B -2.3236
82 R B -2.9664
83 V B 0.0000
84 E B -2.2439
85 A B -1.9656
86 E B -2.2390
87 D B 0.0000
88 V B 0.0000
89 G B 0.0000
90 V B 0.0044
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 F B 0.0000
95 Q B 0.0000
96 G B 0.0000
97 S B 0.0000
98 H B 0.0474
99 V B 0.7343
100 P B -0.1125
101 Y B 0.0000
102 T B 0.0526
103 F B 0.0000
104 G B 0.0000
105 G B -0.3287
106 G B 0.0000
107 T B 0.0000
108 K B -0.2075
109 V B 0.0000
110 E B -0.8193
111 I B 0.0000
112 K B -1.2528
113 R B -1.0054
114 T B -0.1705
115 V B 0.3159
116 A B -0.0208
117 A B -0.1216
118 P B 0.0000
119 S B -0.1984
120 V B 0.0000
121 F B 0.0000
122 I B 0.0000
123 F B 0.0000
124 P B -0.6034
125 P B 0.0000
126 S B -1.8428
127 D B -3.1797
128 E B -3.2186
129 Q B 0.0000
130 L B -2.3892
131 K B -2.9511
132 S B -1.8242
133 G B -1.2849
134 T B -0.9876
135 A B 0.0000
136 S B 0.0000
137 V B 0.0000
138 V B 0.0000
139 C B 0.0000
140 L B 0.0000
141 L B 0.0000
142 N B 0.0000
143 N B -0.8312
144 F B 0.0000
145 Y B 0.0000
146 P B -1.3940
147 R B -2.1744
148 E B -2.8691
149 A B -2.1471
150 K B -2.4498
151 V B -1.2828
152 Q B -0.9156
153 W B 0.0000
154 K B -0.5806
155 V B 0.0000
156 D B -1.8967
157 N B -1.5158
158 A B -0.2736
159 L B 0.6210
160 Q B -0.1799
161 S B -0.4489
162 G B -0.8826
163 N B -0.7749
164 S B -1.1562
165 Q B -1.4360
166 E B -1.9999
167 S B -0.9778
168 V B -0.5500
169 T B -0.6260
170 E B -1.3018
171 Q B 0.0000
172 D B -1.7782
173 S B -2.2023
174 K B -2.6935
175 D B -2.0163
176 S B 0.0000
177 T B 0.0000
178 Y B 0.0000
179 S B 0.0000
180 L B 0.0000
181 S B 0.0000
182 S B 0.0000
183 T B -0.6731
184 L B 0.0000
185 T B -0.3684
186 L B -0.5435
187 S B -0.9144
188 K B -1.9318
189 A B -1.7147
190 D B -2.1988
191 Y B 0.0000
192 E B -3.4602
193 K B -3.5261
194 H B -2.9165
195 K B -3.2284
196 V B -1.3953
197 Y B 0.0000
198 A B 0.0000
199 C B 0.0000
200 E B -0.8879
201 V B 0.0000
202 T B -1.2664
203 H B 0.0000
204 Q B -1.6951
205 G B -0.4397
206 L B -0.2370
207 S B -0.4520
208 S B -0.4178
209 P B -0.5998
210 V B 0.0955
211 T B -0.3724
212 K B -0.7237
213 S B -0.6445
214 F B 0.0000
215 N B -1.7510
216 R B -2.4153
217 G B -1.8734
218 E B -2.0473
219 C B -0.7986
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Laboratory of Theory of Biopolymers 2018