| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSATASGGSEYSYSTFSSGWFRQAPGQEREAVSAIASMGGLTYYADSVKGRFTSSRDNAKNTSTLQMNNLKPEDTAIYYVAAVRGYFMRLPSSHNFRYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:05)
[INFO] Main: Simulation completed successfully. (00:01:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5521 | |
| 2 | V | A | -1.3213 | |
| 3 | Q | A | -1.3121 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.2560 | |
| 6 | E | A | -0.4304 | |
| 7 | S | A | -0.9095 | |
| 8 | G | A | -1.3295 | |
| 9 | G | A | -1.2396 | |
| 10 | G | A | -0.9549 | |
| 11 | S | A | -0.7235 | |
| 12 | V | A | -0.7497 | |
| 13 | Q | A | -1.6985 | |
| 14 | A | A | -1.7880 | |
| 15 | G | A | -1.7621 | |
| 16 | G | A | -1.3945 | |
| 17 | S | A | -1.4674 | |
| 18 | L | A | -1.2762 | |
| 19 | R | A | -2.1415 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.6679 | |
| 22 | A | A | 0.0000 | |
| 23 | T | A | -0.5448 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.0054 | |
| 26 | G | A | -1.6081 | |
| 27 | G | A | -1.5216 | |
| 28 | S | A | -1.4104 | |
| 29 | E | A | -2.2605 | |
| 30 | Y | A | -1.5605 | |
| 31 | S | A | -1.4922 | |
| 32 | Y | A | 0.0000 | |
| 33 | S | A | -0.8515 | |
| 34 | T | A | -0.6445 | |
| 35 | F | A | 0.0000 | |
| 36 | S | A | 0.0000 | |
| 37 | S | A | 0.0000 | |
| 38 | G | A | 0.0000 | |
| 39 | W | A | 0.0000 | |
| 40 | F | A | 0.0000 | |
| 41 | R | A | -1.0940 | |
| 42 | Q | A | -1.6432 | |
| 43 | A | A | -1.6684 | |
| 44 | P | A | -1.1896 | |
| 45 | G | A | -1.6660 | |
| 46 | Q | A | -2.7197 | |
| 47 | E | A | -3.0862 | |
| 48 | R | A | -2.2615 | |
| 49 | E | A | -1.6220 | |
| 50 | A | A | -0.3992 | |
| 51 | V | A | 0.0000 | |
| 52 | S | A | 0.0000 | |
| 53 | A | A | 0.6034 | |
| 54 | I | A | 0.0000 | |
| 55 | A | A | 1.1274 | |
| 56 | S | A | 0.7132 | |
| 57 | M | A | 0.8444 | |
| 58 | G | A | -0.0692 | |
| 59 | G | A | 0.3206 | |
| 60 | L | A | 1.6262 | |
| 61 | T | A | 0.7499 | |
| 62 | Y | A | 0.7354 | |
| 63 | Y | A | -0.5194 | |
| 64 | A | A | 0.0000 | |
| 65 | D | A | -2.3901 | |
| 66 | S | A | -1.7761 | |
| 67 | V | A | 0.0000 | |
| 68 | K | A | -2.5404 | |
| 69 | G | A | -1.8796 | |
| 70 | R | A | -1.6681 | |
| 71 | F | A | 0.0000 | |
| 72 | T | A | -0.7536 | |
| 73 | S | A | 0.0000 | |
| 74 | S | A | -0.6987 | |
| 75 | R | A | -1.2914 | |
| 76 | D | A | -2.0624 | |
| 77 | N | A | -2.2358 | |
| 78 | A | A | -1.7172 | |
| 79 | K | A | -2.4393 | |
| 80 | N | A | -1.8074 | |
| 81 | T | A | -1.2632 | |
| 82 | S | A | 0.0000 | |
| 83 | T | A | -0.8158 | |
| 84 | L | A | 0.0000 | |
| 85 | Q | A | -1.0917 | |
| 86 | M | A | 0.0000 | |
| 87 | N | A | -1.8425 | |
| 88 | N | A | -2.2486 | |
| 89 | L | A | 0.0000 | |
| 90 | K | A | -2.3579 | |
| 91 | P | A | -1.7611 | |
| 92 | E | A | -2.2243 | |
| 93 | D | A | 0.0000 | |
| 94 | T | A | -1.0745 | |
| 95 | A | A | 0.0000 | |
| 96 | I | A | -0.4194 | |
| 97 | Y | A | 0.0000 | |
| 98 | Y | A | -0.2846 | |
| 99 | V | A | 0.0000 | |
| 100 | A | A | 0.0000 | |
| 101 | A | A | 0.0000 | |
| 102 | V | A | 0.0000 | |
| 103 | R | A | -1.8752 | |
| 104 | G | A | 0.2632 | |
| 105 | Y | A | 1.9725 | |
| 106 | F | A | 1.9630 | |
| 107 | M | A | 1.7038 | |
| 108 | R | A | -0.1319 | |
| 109 | L | A | 1.1300 | |
| 110 | P | A | 0.3770 | |
| 111 | S | A | -0.5866 | |
| 112 | S | A | -0.9162 | |
| 113 | H | A | -1.4730 | |
| 114 | N | A | -1.1330 | |
| 115 | F | A | -1.1449 | |
| 116 | R | A | -2.0754 | |
| 117 | Y | A | -0.9979 | |
| 118 | W | A | -0.3136 | |
| 119 | G | A | -0.3937 | |
| 120 | Q | A | -1.0624 | |
| 121 | G | A | -0.6994 | |
| 122 | T | A | 0.0000 | |
| 123 | Q | A | -1.3023 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | -0.9282 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -1.1052 | |
| 128 | S | A | -0.8075 |