Project name: query_structure

Status: done

Started: 2026-03-17 00:55:04
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Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSATASGGSEYSYSTFSSGWFRQAPGQEREAVSAIASMGGLTYYADSVKGRFTSSRDNAKNTSTLQMNNLKPEDTAIYYVAAVRGYFMRLPSSHNFRYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:06)
Show buried residues

Minimal score value
-3.0862
Maximal score value
1.9725
Average score
-0.7403
Total score value
-94.7607

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5521
2 V A -1.3213
3 Q A -1.3121
4 L A 0.0000
5 V A 0.2560
6 E A -0.4304
7 S A -0.9095
8 G A -1.3295
9 G A -1.2396
10 G A -0.9549
11 S A -0.7235
12 V A -0.7497
13 Q A -1.6985
14 A A -1.7880
15 G A -1.7621
16 G A -1.3945
17 S A -1.4674
18 L A -1.2762
19 R A -2.1415
20 L A 0.0000
21 S A -0.6679
22 A A 0.0000
23 T A -0.5448
24 A A 0.0000
25 S A -1.0054
26 G A -1.6081
27 G A -1.5216
28 S A -1.4104
29 E A -2.2605
30 Y A -1.5605
31 S A -1.4922
32 Y A 0.0000
33 S A -0.8515
34 T A -0.6445
35 F A 0.0000
36 S A 0.0000
37 S A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A -1.0940
42 Q A -1.6432
43 A A -1.6684
44 P A -1.1896
45 G A -1.6660
46 Q A -2.7197
47 E A -3.0862
48 R A -2.2615
49 E A -1.6220
50 A A -0.3992
51 V A 0.0000
52 S A 0.0000
53 A A 0.6034
54 I A 0.0000
55 A A 1.1274
56 S A 0.7132
57 M A 0.8444
58 G A -0.0692
59 G A 0.3206
60 L A 1.6262
61 T A 0.7499
62 Y A 0.7354
63 Y A -0.5194
64 A A 0.0000
65 D A -2.3901
66 S A -1.7761
67 V A 0.0000
68 K A -2.5404
69 G A -1.8796
70 R A -1.6681
71 F A 0.0000
72 T A -0.7536
73 S A 0.0000
74 S A -0.6987
75 R A -1.2914
76 D A -2.0624
77 N A -2.2358
78 A A -1.7172
79 K A -2.4393
80 N A -1.8074
81 T A -1.2632
82 S A 0.0000
83 T A -0.8158
84 L A 0.0000
85 Q A -1.0917
86 M A 0.0000
87 N A -1.8425
88 N A -2.2486
89 L A 0.0000
90 K A -2.3579
91 P A -1.7611
92 E A -2.2243
93 D A 0.0000
94 T A -1.0745
95 A A 0.0000
96 I A -0.4194
97 Y A 0.0000
98 Y A -0.2846
99 V A 0.0000
100 A A 0.0000
101 A A 0.0000
102 V A 0.0000
103 R A -1.8752
104 G A 0.2632
105 Y A 1.9725
106 F A 1.9630
107 M A 1.7038
108 R A -0.1319
109 L A 1.1300
110 P A 0.3770
111 S A -0.5866
112 S A -0.9162
113 H A -1.4730
114 N A -1.1330
115 F A -1.1449
116 R A -2.0754
117 Y A -0.9979
118 W A -0.3136
119 G A -0.3937
120 Q A -1.0624
121 G A -0.6994
122 T A 0.0000
123 Q A -1.3023
124 V A 0.0000
125 T A -0.9282
126 V A 0.0000
127 S A -1.1052
128 S A -0.8075
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Laboratory of Theory of Biopolymers 2018