| Chain sequence(s) |
A: QLVESGGGLVQPGGSLRLSCAASGSVFKINVMAWYRQAPGKGRELVAGIISGGSTSYADSVKGRFTISRDNAKNTLYLQMNSLRPEDTAVYYCAFITTESDYDLGRRYWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:09)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:09)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:09)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:09)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:09)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:09)
[INFO] Main: Simulation completed successfully. (00:00:10)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 3 | Q | A | -0.9922 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.4326 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.4178 | |
| 8 | G | A | -0.8732 | |
| 9 | G | A | 0.0504 | |
| 10 | G | A | 0.8043 | |
| 11 | L | A | 1.4700 | |
| 12 | V | A | -0.0049 | |
| 13 | Q | A | -1.3030 | |
| 14 | P | A | -1.5665 | |
| 15 | G | A | -1.3986 | |
| 16 | G | A | -0.9651 | |
| 17 | S | A | -1.0956 | |
| 18 | L | A | -0.8639 | |
| 19 | R | A | -1.9797 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4911 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.5347 | |
| 24 | A | A | -0.5585 | |
| 25 | S | A | -0.7438 | |
| 26 | G | A | -0.2913 | |
| 27 | S | A | 0.2374 | |
| 28 | V | A | 1.4615 | |
| 29 | F | A | 0.7533 | |
| 30 | K | A | -1.3015 | |
| 31 | I | A | -0.2047 | |
| 32 | N | A | 0.0467 | |
| 33 | V | A | 0.6924 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.1751 | |
| 38 | R | A | -0.7728 | |
| 39 | Q | A | -1.5145 | |
| 40 | A | A | -1.4923 | |
| 41 | P | A | -1.0948 | |
| 42 | G | A | -1.5831 | |
| 43 | K | A | -2.8342 | |
| 44 | G | A | -2.3420 | |
| 45 | R | A | -2.1855 | |
| 46 | E | A | -1.8278 | |
| 47 | L | A | 0.1294 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | I | A | 1.7659 | |
| 53 | S | A | 0.3457 | |
| 54 | G | A | -0.1589 | |
| 55 | G | A | -0.1161 | |
| 56 | S | A | 0.1541 | |
| 57 | T | A | 0.2001 | |
| 58 | S | A | -0.1510 | |
| 59 | Y | A | -0.6212 | |
| 60 | A | A | -1.1254 | |
| 61 | D | A | -2.4782 | |
| 62 | S | A | -1.7127 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.6025 | |
| 65 | G | A | -1.7244 | |
| 66 | R | A | -1.5038 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.8593 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6855 | |
| 71 | R | A | -1.5809 | |
| 72 | D | A | -2.1500 | |
| 73 | N | A | -2.5639 | |
| 74 | A | A | -1.8870 | |
| 75 | K | A | -2.7849 | |
| 76 | N | A | -2.2852 | |
| 77 | T | A | 0.0000 | |
| 78 | L | A | 0.0000 | |
| 79 | Y | A | -0.6811 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2601 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.4924 | |
| 84 | S | A | -1.2731 | |
| 85 | L | A | 0.0000 | |
| 86 | R | A | -2.2961 | |
| 87 | P | A | -1.8579 | |
| 88 | E | A | -2.3116 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.4436 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | 0.6514 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | 0.1332 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | F | A | 0.0000 | |
| 98 | I | A | -0.2892 | |
| 99 | T | A | -0.9285 | |
| 100 | T | A | -1.8025 | |
| 101 | E | A | -2.2462 | |
| 102 | S | A | -1.7297 | |
| 103 | D | A | -1.9809 | |
| 104 | Y | A | -0.1661 | |
| 105 | D | A | -1.1917 | |
| 106 | L | A | 0.0421 | |
| 107 | G | A | -1.5614 | |
| 108 | R | A | -2.4256 | |
| 109 | R | A | -1.5699 | |
| 110 | Y | A | 0.0572 | |
| 111 | W | A | 0.4570 | |
| 112 | G | A | 0.0000 | |
| 113 | Q | A | -0.8041 | |
| 114 | G | A | 0.0025 | |
| 115 | T | A | 0.5206 | |
| 116 | L | A | 1.6276 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | 0.3623 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.6540 | |
| 121 | S | A | -0.8645 |