Project name: e73ebfbcdcdd8a

Status: done

Started: 2026-06-27 10:15:41
Settings
Chain sequence(s) A: MSHHHHHHSGKEEKVEKIYKEVRDTAIWHQGRIQNKYWYGFDKGEDPREVILEEVKELEKEILSEEFYKKMGLDEDPELKKVFEEVFKKKFEEIKDYIRNEMTHWSGVSEKLLEAIEKMKEEMLKKLGNS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:09:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:17)
Show buried residues

Minimal score value
-4.2887
Maximal score value
0.9221
Average score
-1.8393
Total score value
-239.1081

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.2395
2 S A -1.0576
3 H A -2.1873
4 H A -2.5849
5 H A -2.8053
6 H A -3.1909
7 H A -3.2396
8 H A -3.3802
9 S A -3.0155
10 G A -2.9422
11 K A -3.1675
12 E A -4.1589
13 E A -4.1354
14 K A -3.3013
15 V A 0.0000
16 E A -3.5401
17 K A -3.4539
18 I A 0.0000
19 Y A -2.6251
20 K A -2.6431
21 E A -2.3467
22 V A 0.0000
23 R A -1.3399
24 D A -0.9946
25 T A -0.4564
26 A A 0.0000
27 I A 0.7140
28 W A 0.9221
29 H A 0.0000
30 Q A -0.3063
31 G A -0.6968
32 R A -1.6417
33 I A 0.0000
34 Q A -0.9061
35 N A -0.8710
36 K A -0.8141
37 Y A -0.5121
38 W A 0.7857
39 Y A 0.5738
40 G A 0.0000
41 F A 0.0908
42 D A -1.5578
43 K A -2.4153
44 G A -2.1580
45 E A -3.0767
46 D A -2.8419
47 P A -1.6456
48 R A -3.1041
49 E A -3.5941
50 V A -2.1462
51 I A 0.0000
52 L A 0.0000
53 E A -3.2063
54 E A 0.0000
55 V A 0.0000
56 K A -3.4579
57 E A -3.3961
58 L A 0.0000
59 E A -2.7656
60 K A -3.3124
61 E A -3.1377
62 I A 0.0000
63 L A -1.7640
64 S A -2.6879
65 E A -3.8778
66 E A -3.8714
67 F A 0.0000
68 Y A -3.2714
69 K A -4.2887
70 K A -3.5634
71 M A 0.0000
72 G A -2.8074
73 L A 0.0000
74 D A -4.0853
75 E A -3.4098
76 D A -2.8547
77 P A -2.7403
78 E A -3.1785
79 L A 0.0000
80 K A -2.9572
81 K A -3.2426
82 V A -2.2650
83 F A 0.0000
84 E A -2.3296
85 E A -2.8334
86 V A 0.0000
87 F A 0.0000
88 K A -3.0860
89 K A -3.6186
90 K A 0.0000
91 F A 0.0000
92 E A -4.0944
93 E A -3.8492
94 I A 0.0000
95 K A -3.4751
96 D A -4.1429
97 Y A -3.1824
98 I A 0.0000
99 R A -4.1507
100 N A -3.5961
101 E A -3.2570
102 M A 0.0000
103 T A -1.2526
104 H A -0.9531
105 W A -0.5976
106 S A -0.8256
107 G A -1.2147
108 V A 0.0000
109 S A -1.2235
110 E A -2.3803
111 K A -2.1167
112 L A 0.0000
113 L A -1.6565
114 E A -2.8825
115 A A 0.0000
116 I A 0.0000
117 E A -3.2650
118 K A -3.0882
119 M A 0.0000
120 K A -3.0611
121 E A -3.3683
122 E A -3.1298
123 M A 0.0000
124 L A -2.7942
125 K A -3.1447
126 K A -2.5897
127 L A 0.0000
128 G A -2.4704
129 N A -2.2107
130 S A -1.5978
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018