Project name: RFC29

Status: done

Started: 2025-07-15 15:46:25
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Chain sequence(s) A: AEPPIIDEKKEEKTPTTRKVLHKVKVPEKIKKTTIEIKVEFKVEGETLLAGPDVEVRPRIYVQNGNTDIENLGAAQAQTVDAATGAVDTTATFELKITLEDVDKAEVEVEAVVRLPEPAP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:47)
Show buried residues

Minimal score value
-4.7764
Maximal score value
1.3617
Average score
-1.5357
Total score value
-184.2848

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.9002
2 E A -2.4070
3 P A -1.3352
4 P A -0.4811
5 I A -0.0056
6 I A -0.7430
7 D A -2.5589
8 E A -3.2409
9 K A -3.9886
10 K A -4.1584
11 E A -4.3236
12 E A -3.6928
13 K A -3.1053
14 T A -1.6352
15 P A -1.2266
16 T A -1.4842
17 T A 0.0000
18 R A -2.3157
19 K A -2.7292
20 V A 0.0000
21 L A -2.6361
22 H A -2.8059
23 K A -2.8264
24 V A 0.0000
25 K A -1.7810
26 V A 0.0000
27 P A -2.0104
28 E A -3.9429
29 K A -4.5624
30 I A -3.7618
31 K A -4.3657
32 K A -3.6112
33 T A -1.6314
34 T A -1.1697
35 I A 0.0000
36 E A -3.0168
37 I A 0.0000
38 K A -3.1984
39 V A 0.0000
40 E A -2.7333
41 F A -1.8372
42 K A -2.7413
43 V A 0.0000
44 E A -3.3079
45 G A -2.4155
46 E A -1.8887
47 T A -0.7199
48 L A 0.0072
49 L A 1.3617
50 A A 0.1942
51 G A -0.7457
52 P A 0.0000
53 D A -2.6106
54 V A -1.6156
55 E A -2.0297
56 V A 0.0000
57 R A -2.6761
58 P A -1.9748
59 R A -2.3135
60 I A -0.2117
61 Y A 0.3773
62 V A -0.1700
63 Q A -2.2403
64 N A -2.7392
65 G A -3.3728
66 N A -3.2640
67 T A -2.2054
68 D A -1.9851
69 I A -0.5246
70 E A -2.5203
71 N A -2.3878
72 L A -0.8365
73 G A -1.0324
74 A A -0.7488
75 A A -0.5710
76 Q A -1.1379
77 A A -0.9630
78 Q A -1.1336
79 T A -0.4884
80 V A 0.6357
81 D A -0.7174
82 A A -0.0848
83 A A -0.1380
84 T A -0.4265
85 G A -0.2040
86 A A -0.9132
87 V A 0.0000
88 D A -2.5073
89 T A 0.0000
90 T A -1.7728
91 A A 0.0000
92 T A -1.6080
93 F A 0.0000
94 E A -2.9299
95 L A 0.0000
96 K A -2.5774
97 I A 0.0000
98 T A -1.6942
99 L A 0.0000
100 E A -4.0587
101 D A -4.7764
102 V A 0.0000
103 D A -3.5567
104 K A -3.0760
105 A A 0.0000
106 E A -1.3173
107 V A 0.0000
108 E A -2.4078
109 V A 0.0000
110 E A -2.2678
111 A A 0.0000
112 V A 0.0000
113 V A 0.0000
114 R A -2.8847
115 L A -1.7430
116 P A -1.4274
117 E A -1.9999
118 P A -1.0593
119 A A -0.3847
120 P A -0.5335
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Laboratory of Theory of Biopolymers 2018