| Chain sequence(s) |
A: GLPVCGETCVGGTCNTPGCKCSWPVCTRN
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:13)
[INFO] Main: Simulation completed successfully. (00:00:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.8405 | |
| 2 | L | A | 0.9411 | |
| 3 | P | A | 0.5882 | |
| 4 | V | A | 1.5660 | |
| 5 | C | A | -0.0306 | |
| 6 | G | A | -0.2526 | |
| 7 | E | A | -0.2497 | |
| 8 | T | A | 0.2049 | |
| 9 | C | A | 0.0000 | |
| 10 | V | A | 1.7064 | |
| 11 | G | A | 0.3073 | |
| 12 | G | A | -0.1616 | |
| 13 | T | A | -0.3875 | |
| 14 | C | A | -1.1050 | |
| 15 | N | A | -1.6912 | |
| 16 | T | A | -1.1388 | |
| 17 | P | A | -1.3550 | |
| 18 | G | A | -1.9479 | |
| 19 | C | A | -1.8070 | |
| 20 | K | A | -2.2117 | |
| 21 | C | A | -0.4930 | |
| 22 | S | A | 0.3888 | |
| 23 | W | A | 1.3608 | |
| 24 | P | A | 1.2979 | |
| 25 | V | A | 1.0769 | |
| 26 | C | A | 0.0000 | |
| 27 | T | A | -0.5807 | |
| 28 | R | A | -1.5910 | |
| 29 | N | A | -1.9857 |