Project name: query_structure

Status: done

Started: 2025-11-29 10:46:19
Settings
Chain sequence(s) A: GLPVCGETCVGGTCNTPGCKCSWPVCTRN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:13)
Show buried residues

Minimal score value
-2.2117
Maximal score value
1.7064
Average score
-0.2894
Total score value
-8.3912

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.8405
2 L A 0.9411
3 P A 0.5882
4 V A 1.5660
5 C A -0.0306
6 G A -0.2526
7 E A -0.2497
8 T A 0.2049
9 C A 0.0000
10 V A 1.7064
11 G A 0.3073
12 G A -0.1616
13 T A -0.3875
14 C A -1.1050
15 N A -1.6912
16 T A -1.1388
17 P A -1.3550
18 G A -1.9479
19 C A -1.8070
20 K A -2.2117
21 C A -0.4930
22 S A 0.3888
23 W A 1.3608
24 P A 1.2979
25 V A 1.0769
26 C A 0.0000
27 T A -0.5807
28 R A -1.5910
29 N A -1.9857
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Laboratory of Theory of Biopolymers 2018