Project name: attr-closedgate

Status: done

Started: 2025-02-06 22:15:30
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Chain sequence(s) B: PLMVKVLDAVRGSPAINVAVHVFRKGLTTEEEFVEGIYKVEIDTKSYWKALGSSPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTN
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:45)
Show buried residues

Minimal score value
-2.8968
Maximal score value
2.8527
Average score
0.2271
Total score value
21.1172

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
11 P B 0.9158
12 L B 2.3397
13 M B 2.2878
14 V B 2.5018
15 K B -0.0955
16 V B 1.4530
17 L B 1.1187
18 D B -1.0826
19 A B -0.1693
20 V B 0.0680
21 R B -1.6835
22 G B -1.2049
23 S B -0.4440
24 P B 0.0126
25 A B 0.6771
26 I B 1.0957
27 N B 0.3505
28 V B 1.8147
29 A B 1.7519
30 V B 2.3856
31 H B 1.3005
32 V B 2.0112
33 F B 0.7467
34 R B -1.4923
35 K B -2.2783
57 G B 0.2019
58 L B 1.3682
59 T B 0.0932
60 T B -1.1539
61 E B -2.7631
62 E B -2.8968
63 E B -1.8683
64 F B 0.3522
65 V B 0.9905
66 E B -0.3746
67 G B -0.0670
68 I B 1.9479
69 Y B 1.2589
70 K B -0.5471
71 V B 0.4334
72 E B -1.3707
73 I B 0.5016
74 D B -0.9586
75 T B -1.4056
76 K B -2.0031
77 S B -0.5960
78 Y B 1.1076
79 W B 0.9884
80 K B -0.5565
81 A B 0.4502
82 L B 1.3048
83 G B 0.3459
84 S B 0.0294
85 S B -0.4596
86 P B -0.0620
87 F B 0.1619
88 H B -1.5696
89 E B -2.4337
90 H B -1.9894
91 A B -0.8734
92 E B -0.5429
93 V B 1.9140
94 V B 2.8527
95 F B 2.7197
96 T B 0.8470
97 A B -0.3250
98 N B -2.0653
99 D B -2.7847
100 S B -1.8322
101 G B -1.6451
102 P B -1.3955
103 R B -1.8924
104 R B -1.5980
105 Y B 0.6998
106 T B 1.2774
107 I B 2.3559
108 A B 1.5580
109 A B 1.4010
110 L B 1.8279
111 L B 1.7765
112 S B 1.0283
113 P B 0.8182
114 Y B 1.5593
115 S B 1.0449
116 Y B 1.3485
117 S B 0.6486
118 T B 0.2520
119 T B 0.7722
120 A B 1.5046
121 V B 2.7839
122 V B 2.2619
123 T B 0.6100
124 N B -0.6319
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Laboratory of Theory of Biopolymers 2018