Project name: query_structure

Status: done

Started: 2026-03-16 21:45:34
Settings
Chain sequence(s) A: MLPAPKNLVVSRVTEDSARLSWTAPDAAFDSFQIYYSELLSYGEAIVLTVPGSERSYDLTGLKPGTEYTVSINGVKGGTRSWSLSAIFTTGGHHHHHHC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:36)
Show buried residues

Minimal score value
-2.8411
Maximal score value
2.0797
Average score
-0.6104
Total score value
-60.4331

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0960
2 L A 0.4967
3 P A 0.0305
4 A A -0.0889
5 P A 0.0000
6 K A -2.0097
7 N A -1.3182
8 L A -0.2080
9 V A 1.1876
10 V A 0.5883
11 S A -0.6614
12 R A -1.9912
13 V A -1.0302
14 T A -1.6202
15 E A -2.4828
16 D A -2.5237
17 S A -1.9922
18 A A 0.0000
19 R A -1.3140
20 L A 0.0000
21 S A -0.6687
22 W A 0.0000
23 T A -1.5225
24 A A -1.6094
25 P A -1.3671
26 D A -2.3723
27 A A -1.4776
28 A A -1.2253
29 F A 0.0000
30 D A -2.5721
31 S A -1.6687
32 F A 0.0000
33 Q A 0.1556
34 I A 0.0000
35 Y A 1.0303
36 Y A 0.9409
37 S A 0.6594
38 E A 0.4589
39 L A 2.0048
40 L A 2.0797
41 S A 1.0215
42 Y A 1.2118
43 G A -0.1751
44 E A -1.2776
45 A A 0.2270
46 I A 1.1878
47 V A 1.8759
48 L A 1.2951
49 T A 0.3497
50 V A 0.0000
51 P A -1.3216
52 G A -2.0155
53 S A -1.8673
54 E A -2.0464
55 R A -2.1589
56 S A -1.2340
57 Y A -1.1428
58 D A -1.8847
59 L A 0.0000
60 T A -1.3552
61 G A -1.4395
62 L A 0.0000
63 K A -2.8411
64 P A -2.5775
65 G A -2.0254
66 T A 0.0000
67 E A -0.1220
68 Y A 0.0000
69 T A 1.0374
70 V A 0.0000
71 S A 0.6536
72 I A 0.0000
73 N A 0.0000
74 G A 0.0000
75 V A -1.4025
76 K A -2.1563
77 G A -1.6704
78 G A -1.4761
79 T A -1.1600
80 R A -1.0221
81 S A 0.0000
82 W A 1.1054
83 S A 0.1560
84 L A 0.0490
85 S A 0.6762
86 A A 1.0794
87 I A 1.9199
88 F A 0.0000
89 T A -0.2498
90 T A 0.0000
91 G A -1.7449
92 G A -2.3131
93 H A -2.3946
94 H A -2.6227
95 H A -2.8299
96 H A -2.6626
97 H A -2.2730
98 H A -1.6369
99 C A -0.1838
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018