Project name: query_structure

Status: done

Started: 2026-03-16 23:44:53
Settings
Chain sequence(s) A: GLPVCGETCVGGTCNTPGCTCSWWPVCTRN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:06)
Show buried residues

Minimal score value
-2.1312
Maximal score value
2.0105
Average score
-0.0661
Total score value
-1.9817

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.9183
2 L A 0.1270
3 P A 0.3721
4 V A 1.0037
5 C A -0.1133
6 G A -0.2079
7 E A -0.1852
8 T A 0.3719
9 C A 0.0000
10 V A 1.6908
11 G A 0.4487
12 G A 0.3517
13 T A -0.0886
14 C A -0.7634
15 N A -1.4336
16 T A -1.1933
17 P A -1.0177
18 G A -1.4466
19 C A -1.3230
20 T A -0.7737
21 C A 0.2704
22 S A 0.3165
23 W A 1.7275
24 W A 2.0105
25 P A 1.5264
26 V A 1.4190
27 C A 0.0000
28 T A 0.0000
29 R A -2.1312
30 N A -2.0221
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Laboratory of Theory of Biopolymers 2018