| Chain sequence(s) |
A: MSHHHHHHSGMPAAAVVVNVVDVMKKNGMNYNEGLAMYKQASEQMYDTLRTSRDPDEISESIMMHAVSLVFLMEIATPENLQEFVQWVRGDGKWLHYVPDQMFWDRPTDAWWEMDPAARKAFRIIYNIMDYIDKTDPKDLEEIGAFLKETTAKLVALIEQWAANNPEQFEKMMAKMEKIAKQVKEGLQKTNS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:06)
[INFO] Main: Simulation completed successfully. (00:06:07)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | 0.5615 | |
| 2 | S | A | -0.6104 | |
| 3 | H | A | -1.7277 | |
| 4 | H | A | -2.3316 | |
| 5 | H | A | -2.7135 | |
| 6 | H | A | -2.7320 | |
| 7 | H | A | -2.5388 | |
| 8 | H | A | -2.0892 | |
| 9 | S | A | -1.2877 | |
| 10 | G | A | -0.8578 | |
| 11 | M | A | -0.1622 | |
| 12 | P | A | -0.1712 | |
| 13 | A | A | -0.3036 | |
| 14 | A | A | 0.2236 | |
| 15 | A | A | 0.1693 | |
| 16 | V | A | 0.0000 | |
| 17 | V | A | 0.0000 | |
| 18 | V | A | 0.9955 | |
| 19 | N | A | -0.8904 | |
| 20 | V | A | 0.0000 | |
| 21 | V | A | 0.0000 | |
| 22 | D | A | -1.8915 | |
| 23 | V | A | -1.5720 | |
| 24 | M | A | 0.0000 | |
| 25 | K | A | -3.2209 | |
| 26 | K | A | -2.9622 | |
| 27 | N | A | -2.3865 | |
| 28 | G | A | -2.1177 | |
| 29 | M | A | 0.0000 | |
| 30 | N | A | -1.8847 | |
| 31 | Y | A | -1.1605 | |
| 32 | N | A | -1.4262 | |
| 33 | E | A | 0.0000 | |
| 34 | G | A | 0.0000 | |
| 35 | L | A | 0.0000 | |
| 36 | A | A | -0.7046 | |
| 37 | M | A | 0.0000 | |
| 38 | Y | A | 0.0000 | |
| 39 | K | A | -1.6295 | |
| 40 | Q | A | -1.7778 | |
| 41 | A | A | 0.0000 | |
| 42 | S | A | 0.0000 | |
| 43 | E | A | -2.6036 | |
| 44 | Q | A | -2.4188 | |
| 45 | M | A | 0.0000 | |
| 46 | Y | A | -1.8732 | |
| 47 | D | A | -2.9254 | |
| 48 | T | A | 0.0000 | |
| 49 | L | A | 0.0000 | |
| 50 | R | A | -3.3058 | |
| 51 | T | A | -2.0029 | |
| 52 | S | A | 0.0000 | |
| 53 | R | A | -3.7628 | |
| 54 | D | A | -3.7538 | |
| 55 | P | A | -3.0900 | |
| 56 | D | A | -3.5138 | |
| 57 | E | A | -3.1082 | |
| 58 | I | A | 0.0000 | |
| 59 | S | A | 0.0000 | |
| 60 | E | A | 0.0000 | |
| 61 | S | A | 0.0000 | |
| 62 | I | A | 0.0000 | |
| 63 | M | A | 0.0000 | |
| 64 | M | A | 0.0000 | |
| 65 | H | A | 0.0000 | |
| 66 | A | A | 0.0000 | |
| 67 | V | A | 0.0000 | |
| 68 | S | A | 0.0000 | |
| 69 | L | A | 0.0000 | |
| 70 | V | A | 0.0000 | |
| 71 | F | A | 0.0000 | |
| 72 | L | A | 0.0000 | |
| 73 | M | A | 0.0000 | |
| 74 | E | A | -2.0180 | |
| 75 | I | A | -0.8675 | |
| 76 | A | A | -1.2256 | |
| 77 | T | A | -1.1723 | |
| 78 | P | A | -1.7387 | |
| 79 | E | A | -2.6150 | |
| 80 | N | A | -2.0845 | |
| 81 | L | A | -1.7601 | |
| 82 | Q | A | -2.8214 | |
| 83 | E | A | -2.9805 | |
| 84 | F | A | 0.0000 | |
| 85 | V | A | 0.0000 | |
| 86 | Q | A | -2.6764 | |
| 87 | W | A | -2.0752 | |
| 88 | V | A | 0.0000 | |
| 89 | R | A | -2.3904 | |
| 90 | G | A | -2.1209 | |
| 91 | D | A | -2.5762 | |
| 92 | G | A | 0.0000 | |
| 93 | K | A | -2.4480 | |
| 94 | W | A | -0.8506 | |
| 95 | L | A | 0.0000 | |
| 96 | H | A | -0.5340 | |
| 97 | Y | A | 0.5515 | |
| 98 | V | A | 0.0000 | |
| 99 | P | A | 0.1924 | |
| 100 | D | A | 0.1491 | |
| 101 | Q | A | -0.4337 | |
| 102 | M | A | -0.4528 | |
| 103 | F | A | 0.8824 | |
| 104 | W | A | 0.3227 | |
| 105 | D | A | -2.0627 | |
| 106 | R | A | -2.2681 | |
| 107 | P | A | -1.4613 | |
| 108 | T | A | -2.3002 | |
| 109 | D | A | -2.6202 | |
| 110 | A | A | 0.0000 | |
| 111 | W | A | 0.0000 | |
| 112 | W | A | -0.4364 | |
| 113 | E | A | -2.4432 | |
| 114 | M | A | 0.0000 | |
| 115 | D | A | -1.5607 | |
| 116 | P | A | -1.1691 | |
| 117 | A | A | 0.0000 | |
| 118 | A | A | 0.0000 | |
| 119 | R | A | -1.6648 | |
| 120 | K | A | -2.5339 | |
| 121 | A | A | 0.0000 | |
| 122 | F | A | 0.0000 | |
| 123 | R | A | -2.1073 | |
| 124 | I | A | -1.5326 | |
| 125 | I | A | 0.0000 | |
| 126 | Y | A | -0.6637 | |
| 127 | N | A | -1.4632 | |
| 128 | I | A | 0.0000 | |
| 129 | M | A | 0.0000 | |
| 130 | D | A | -1.3240 | |
| 131 | Y | A | -1.0688 | |
| 132 | I | A | 0.0000 | |
| 133 | D | A | -2.5602 | |
| 134 | K | A | -2.4016 | |
| 135 | T | A | -2.4549 | |
| 136 | D | A | -3.0626 | |
| 137 | P | A | -3.2848 | |
| 138 | K | A | -3.5044 | |
| 139 | D | A | -4.0892 | |
| 140 | L | A | -3.1763 | |
| 141 | E | A | -3.3880 | |
| 142 | E | A | -3.6352 | |
| 143 | I | A | 0.0000 | |
| 144 | G | A | -2.1599 | |
| 145 | A | A | -1.9546 | |
| 146 | F | A | -1.4613 | |
| 147 | L | A | 0.0000 | |
| 148 | K | A | -3.1411 | |
| 149 | E | A | -2.8714 | |
| 150 | T | A | 0.0000 | |
| 151 | T | A | 0.0000 | |
| 152 | A | A | -1.6046 | |
| 153 | K | A | -2.2984 | |
| 154 | L | A | 0.0000 | |
| 155 | V | A | -0.0895 | |
| 156 | A | A | -0.6495 | |
| 157 | L | A | 0.0000 | |
| 158 | I | A | 0.0000 | |
| 159 | E | A | -0.7666 | |
| 160 | Q | A | -1.3659 | |
| 161 | W | A | 0.0000 | |
| 162 | A | A | 0.0000 | |
| 163 | A | A | -1.3059 | |
| 164 | N | A | -1.9580 | |
| 165 | N | A | -2.1471 | |
| 166 | P | A | -2.2994 | |
| 167 | E | A | -3.1566 | |
| 168 | Q | A | 0.0000 | |
| 169 | F | A | 0.0000 | |
| 170 | E | A | -3.3938 | |
| 171 | K | A | -3.2243 | |
| 172 | M | A | 0.0000 | |
| 173 | M | A | -2.0099 | |
| 174 | A | A | -2.0508 | |
| 175 | K | A | -2.2697 | |
| 176 | M | A | 0.0000 | |
| 177 | E | A | -2.2794 | |
| 178 | K | A | -2.9961 | |
| 179 | I | A | -2.1794 | |
| 180 | A | A | 0.0000 | |
| 181 | K | A | -3.4367 | |
| 182 | Q | A | -3.1912 | |
| 183 | V | A | -2.4480 | |
| 184 | K | A | -3.0741 | |
| 185 | E | A | -3.6670 | |
| 186 | G | A | -2.7162 | |
| 187 | L | A | -2.2891 | |
| 188 | Q | A | -3.3009 | |
| 189 | K | A | -3.2752 | |
| 190 | T | A | -2.1244 | |
| 191 | N | A | -2.2972 | |
| 192 | S | A | -1.6934 |