Project name: Q11_20

Status: done

Started: 2026-06-26 05:34:58
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Chain sequence(s) A: QQKFQFQFEQQ
C: QQKFQFQFEQQ
B: QQKFQFQFEQQ
E: QQKFQFQFEQQ
D: QQKFQFQFEQQ
G: QQKFQFQFEQQ
F: QQKFQFQFEQQ
I: QQKFQFQFEQQ
H: QQKFQFQFEQQ
K: QQKFQFQFEQQ
J: QQKFQFQFEQQ
M: QQKFQFQFEQQ
L: QQKFQFQFEQQ
O: QQKFQFQFEQQ
N: QQKFQFQFEQQ
Q: QQKFQFQFEQQ
P: QQKFQFQFEQQ
S: QQKFQFQFEQQ
R: QQKFQFQFEQQ
T: QQKFQFQFEQQ
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:34:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:34:23)
Show buried residues

Minimal score value
-3.782
Maximal score value
1.6602
Average score
-1.1106
Total score value
-244.3412

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.8603
2 Q A -2.3503
3 K A -1.7139
4 F A -0.0779
5 Q A 0.0097
6 F A 0.7363
7 Q A 0.2913
8 F A 0.2295
9 E A -1.2796
10 Q A -2.1440
11 Q A -2.7004
1 Q B -2.7164
2 Q B -1.9955
3 K B -1.2104
4 F B 0.4143
5 Q B 0.2522
6 F B 0.7026
7 Q B -0.0135
8 F B -0.2213
9 E B -1.9916
10 Q B -2.6326
11 Q B -3.0437
1 Q C -3.3378
2 Q C -2.8004
3 K C -1.8440
4 F C 0.0496
5 Q C 0.0629
6 F C 0.7655
7 Q C 0.2593
8 F C 0.2207
9 E C -1.4214
10 Q C -2.1630
11 Q C -2.9090
1 Q D -2.9893
2 Q D -2.3004
3 K D -1.4412
4 F D 0.2477
5 Q D 0.0897
6 F D 0.6596
7 Q D 0.0073
8 F D -0.1337
9 E D -2.0689
10 Q D -2.9651
11 Q D -3.3058
1 Q E -3.3574
2 Q E -2.7246
3 K E -2.0536
4 F E -0.0616
5 Q E 0.1141
6 F E 0.7515
7 Q E 0.1844
8 F E 0.0576
9 E E -1.4347
10 Q E -2.1689
11 Q E -2.7517
1 Q F -2.4420
2 Q F -2.2005
3 K F -1.4557
4 F F 0.1114
5 Q F 0.1352
6 F F 0.6680
7 Q F -0.0508
8 F F -0.0759
9 E F -1.7846
10 Q F -2.6180
11 Q F -2.8139
1 Q G -2.6089
2 Q G -2.4594
3 K G -1.5576
4 F G 0.1178
5 Q G 0.2616
6 F G 0.8691
7 Q G 0.1740
8 F G -0.0947
9 E G -1.5562
10 Q G -2.1663
11 Q G -2.4586
1 Q H -3.4066
2 Q H -2.5437
3 K H -1.2878
4 F H 0.2272
5 Q H 0.5007
6 F H 1.1434
7 Q H 0.0000
8 F H 0.1716
9 E H 0.0000
10 Q H -2.7680
11 Q H -2.7904
1 Q I -3.2558
2 Q I -2.6689
3 K I -1.7759
4 F I 0.0000
5 Q I 0.5385
6 F I 1.2786
7 Q I 0.0000
8 F I 0.0000
9 E I 0.0000
10 Q I -2.6597
11 Q I -3.7820
1 Q J 0.0000
2 Q J -2.9614
3 K J -1.7571
4 F J 0.4625
5 Q J 0.3789
6 F J 1.4975
7 Q J 0.5565
8 F J 0.6362
9 E J -1.6199
10 Q J -2.6472
11 Q J -3.1252
1 Q K -3.0242
2 Q K -2.6747
3 K K -1.5182
4 F K 0.7436
5 Q K 0.4923
6 F K 1.4399
7 Q K 0.2486
8 F K 0.3118
9 E K -2.0129
10 Q K -3.0634
11 Q K -3.5700
1 Q L -3.2860
2 Q L -3.4213
3 K L -2.6793
4 F L -0.2550
5 Q L 0.2184
6 F L 1.2910
7 Q L 0.6843
8 F L 0.9083
9 E L 0.0000
10 Q L 0.0000
11 Q L 0.0000
1 Q M -3.1994
2 Q M 0.0000
3 K M -1.2948
4 F M 0.0000
5 Q M 0.5114
6 F M 0.0000
7 Q M -0.0641
8 F M 0.0000
9 E M -2.8154
10 Q M -3.6453
11 Q M -3.0173
1 Q N -2.7822
2 Q N -2.3238
3 K N -2.0290
4 F N 0.8577
5 Q N 0.1922
6 F N 1.6602
7 Q N -0.4193
8 F N -0.4979
9 E N -2.9689
10 Q N -2.8457
11 Q N -2.7128
1 Q O -3.1047
2 Q O -2.6463
3 K O -2.2244
4 F O -0.0438
5 Q O -0.0511
6 F O 1.2513
7 Q O 0.1676
8 F O 0.0013
9 E O -1.8881
10 Q O -2.5731
11 Q O -2.9321
1 Q P -2.6640
2 Q P -2.3280
3 K P -1.5637
4 F P 0.1424
5 Q P -0.0616
6 F P 0.8917
7 Q P -0.1593
8 F P -0.3521
9 E P -2.0575
10 Q P -2.5532
11 Q P -2.8181
1 Q Q -2.9640
2 Q Q -2.3227
3 K Q -1.7733
4 F Q 0.0460
5 Q Q -0.1222
6 F Q 0.7041
7 Q Q -0.0284
8 F Q 0.0816
9 E Q -1.5975
10 Q Q -2.2421
11 Q Q -2.7633
1 Q R -2.7273
2 Q R -2.0985
3 K R -1.2985
4 F R 0.4328
5 Q R 0.1812
6 F R 0.7316
7 Q R -0.1702
8 F R -0.1832
9 E R -1.9564
10 Q R -2.4913
11 Q R -2.9450
1 Q S -3.2571
2 Q S -2.5770
3 K S -1.7623
4 F S 0.0766
5 Q S 0.0714
6 F S 0.7863
7 Q S 0.3594
8 F S 0.4177
9 E S -1.2281
10 Q S -2.1078
11 Q S -2.7485
1 Q T -2.5053
2 Q T -1.9240
3 K T -1.1196
4 F T 0.4088
5 Q T 0.2175
6 F T 0.7179
7 Q T 0.0363
8 F T -0.0963
9 E T -1.8937
10 Q T -2.8038
11 Q T -3.0329
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Laboratory of Theory of Biopolymers 2018