Project name: GSKGHFF20

Status: done

Started: 2026-02-20 12:56:44
Settings
Chain sequence(s) A: GSKGHFF
C: GSKGHFF
B: GSKGHFF
E: GSKGHFF
D: GSKGHFF
G: GSKGHFF
F: GSKGHFF
I: GSKGHFF
H: GSKGHFF
K: GSKGHFF
J: GSKGHFF
M: GSKGHFF
L: GSKGHFF
O: GSKGHFF
N: GSKGHFF
Q: GSKGHFF
P: GSKGHFF
S: GSKGHFF
R: GSKGHFF
T: GSKGHFF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:09:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:51)
Show buried residues

Minimal score value
-2.8239
Maximal score value
3.5181
Average score
-0.2971
Total score value
-41.6009

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.2241
2 S A -1.4984
3 K A -2.1437
4 G A 0.0000
5 H A 0.3191
6 F A 2.5476
7 F A 0.0000
1 G B -1.0551
2 S B -1.0486
3 K B -1.1850
4 G B 0.0715
5 H B 1.4154
6 F B 2.3053
7 F B 2.5863
1 G C -1.2775
2 S C -1.4357
3 K C -1.9249
4 G C -0.0471
5 H C 1.5836
6 F C 2.7954
7 F C 3.4872
1 G D -1.7728
2 S D -2.2572
3 K D -1.7664
4 G D 0.0000
5 H D 1.0938
6 F D 3.1930
7 F D 3.3042
1 G E -2.0170
2 S E -1.8719
3 K E -0.3571
4 G E 0.0000
5 H E 0.0000
6 F E 3.0451
7 F E 3.5181
1 G F -1.5134
2 S F -1.3493
3 K F -1.2654
4 G F 0.5512
5 H F 1.2457
6 F F 2.5395
7 F F 2.3599
1 G G -1.8558
2 S G -1.4648
3 K G -1.1459
4 G G 0.0000
5 H G 1.0802
6 F G 1.8469
7 F G 2.8559
1 G H -1.2943
2 S H -1.8894
3 K H -2.3725
4 G H -1.4928
5 H H -0.5201
6 F H 1.0580
7 F H 1.6991
1 G I -1.3165
2 S I -2.0566
3 K I -2.8205
4 G I 0.0000
5 H I -0.7566
6 F I 0.9955
7 F I 1.9122
1 G J -1.2459
2 S J -1.6894
3 K J -2.4607
4 G J -1.3383
5 H J -0.6755
6 F J 1.0126
7 F J 2.3457
1 G K -0.9787
2 S K -1.2253
3 K K -2.3170
4 G K -1.0448
5 H K -0.4862
6 F K 0.0000
7 F K 2.4608
1 G L -1.3112
2 S L -2.0827
3 K L -2.8239
4 G L 0.0000
5 H L -0.6635
6 F L 0.0000
7 F L 2.2856
1 G M -1.1476
2 S M -1.3187
3 K M -2.2096
4 G M -0.9915
5 H M -0.8311
6 F M 0.0000
7 F M 1.2994
1 G N -1.1584
2 S N -1.5097
3 K N -2.4373
4 G N -1.4790
5 H N -0.8833
6 F N 0.3389
7 F N 1.1184
1 G O -1.0328
2 S O -1.2954
3 K O -2.0854
4 G O 0.0000
5 H O -0.9477
6 F O 0.0000
7 F O 1.7863
1 G P -1.0842
2 S P -1.6561
3 K P -2.3547
4 G P -1.8218
5 H P -0.8966
6 F P 0.6417
7 F P 1.1831
1 G Q -1.3749
2 S Q -1.7886
3 K Q -2.5935
4 G Q -1.4246
5 H Q -0.5742
6 F Q 1.1150
7 F Q 1.5130
1 G R -1.4181
2 S R -1.4573
3 K R -2.2082
4 G R 0.0000
5 H R 0.2646
6 F R 2.7289
7 F R 2.4401
1 G S -1.4123
2 S S -1.6923
3 K S -2.6434
4 G S -1.1014
5 H S -0.5818
6 F S 2.1886
7 F S 0.0000
1 G T -1.3739
2 S T -1.6623
3 K T -2.3642
4 G T -0.8956
5 H T -0.0306
6 F T 2.3646
7 F T 1.9797
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Laboratory of Theory of Biopolymers 2018