| Chain sequence(s) |
A: GSKGHFF
C: GSKGHFF B: GSKGHFF E: GSKGHFF D: GSKGHFF G: GSKGHFF F: GSKGHFF I: GSKGHFF H: GSKGHFF K: GSKGHFF J: GSKGHFF M: GSKGHFF L: GSKGHFF O: GSKGHFF N: GSKGHFF Q: GSKGHFF P: GSKGHFF S: GSKGHFF R: GSKGHFF T: GSKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:09:46)
[INFO] Main: Simulation completed successfully. (00:09:51)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.2241 | |
| 2 | S | A | -1.4984 | |
| 3 | K | A | -2.1437 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | 0.3191 | |
| 6 | F | A | 2.5476 | |
| 7 | F | A | 0.0000 | |
| 1 | G | B | -1.0551 | |
| 2 | S | B | -1.0486 | |
| 3 | K | B | -1.1850 | |
| 4 | G | B | 0.0715 | |
| 5 | H | B | 1.4154 | |
| 6 | F | B | 2.3053 | |
| 7 | F | B | 2.5863 | |
| 1 | G | C | -1.2775 | |
| 2 | S | C | -1.4357 | |
| 3 | K | C | -1.9249 | |
| 4 | G | C | -0.0471 | |
| 5 | H | C | 1.5836 | |
| 6 | F | C | 2.7954 | |
| 7 | F | C | 3.4872 | |
| 1 | G | D | -1.7728 | |
| 2 | S | D | -2.2572 | |
| 3 | K | D | -1.7664 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | 1.0938 | |
| 6 | F | D | 3.1930 | |
| 7 | F | D | 3.3042 | |
| 1 | G | E | -2.0170 | |
| 2 | S | E | -1.8719 | |
| 3 | K | E | -0.3571 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | 0.0000 | |
| 6 | F | E | 3.0451 | |
| 7 | F | E | 3.5181 | |
| 1 | G | F | -1.5134 | |
| 2 | S | F | -1.3493 | |
| 3 | K | F | -1.2654 | |
| 4 | G | F | 0.5512 | |
| 5 | H | F | 1.2457 | |
| 6 | F | F | 2.5395 | |
| 7 | F | F | 2.3599 | |
| 1 | G | G | -1.8558 | |
| 2 | S | G | -1.4648 | |
| 3 | K | G | -1.1459 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | 1.0802 | |
| 6 | F | G | 1.8469 | |
| 7 | F | G | 2.8559 | |
| 1 | G | H | -1.2943 | |
| 2 | S | H | -1.8894 | |
| 3 | K | H | -2.3725 | |
| 4 | G | H | -1.4928 | |
| 5 | H | H | -0.5201 | |
| 6 | F | H | 1.0580 | |
| 7 | F | H | 1.6991 | |
| 1 | G | I | -1.3165 | |
| 2 | S | I | -2.0566 | |
| 3 | K | I | -2.8205 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -0.7566 | |
| 6 | F | I | 0.9955 | |
| 7 | F | I | 1.9122 | |
| 1 | G | J | -1.2459 | |
| 2 | S | J | -1.6894 | |
| 3 | K | J | -2.4607 | |
| 4 | G | J | -1.3383 | |
| 5 | H | J | -0.6755 | |
| 6 | F | J | 1.0126 | |
| 7 | F | J | 2.3457 | |
| 1 | G | K | -0.9787 | |
| 2 | S | K | -1.2253 | |
| 3 | K | K | -2.3170 | |
| 4 | G | K | -1.0448 | |
| 5 | H | K | -0.4862 | |
| 6 | F | K | 0.0000 | |
| 7 | F | K | 2.4608 | |
| 1 | G | L | -1.3112 | |
| 2 | S | L | -2.0827 | |
| 3 | K | L | -2.8239 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -0.6635 | |
| 6 | F | L | 0.0000 | |
| 7 | F | L | 2.2856 | |
| 1 | G | M | -1.1476 | |
| 2 | S | M | -1.3187 | |
| 3 | K | M | -2.2096 | |
| 4 | G | M | -0.9915 | |
| 5 | H | M | -0.8311 | |
| 6 | F | M | 0.0000 | |
| 7 | F | M | 1.2994 | |
| 1 | G | N | -1.1584 | |
| 2 | S | N | -1.5097 | |
| 3 | K | N | -2.4373 | |
| 4 | G | N | -1.4790 | |
| 5 | H | N | -0.8833 | |
| 6 | F | N | 0.3389 | |
| 7 | F | N | 1.1184 | |
| 1 | G | O | -1.0328 | |
| 2 | S | O | -1.2954 | |
| 3 | K | O | -2.0854 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | -0.9477 | |
| 6 | F | O | 0.0000 | |
| 7 | F | O | 1.7863 | |
| 1 | G | P | -1.0842 | |
| 2 | S | P | -1.6561 | |
| 3 | K | P | -2.3547 | |
| 4 | G | P | -1.8218 | |
| 5 | H | P | -0.8966 | |
| 6 | F | P | 0.6417 | |
| 7 | F | P | 1.1831 | |
| 1 | G | Q | -1.3749 | |
| 2 | S | Q | -1.7886 | |
| 3 | K | Q | -2.5935 | |
| 4 | G | Q | -1.4246 | |
| 5 | H | Q | -0.5742 | |
| 6 | F | Q | 1.1150 | |
| 7 | F | Q | 1.5130 | |
| 1 | G | R | -1.4181 | |
| 2 | S | R | -1.4573 | |
| 3 | K | R | -2.2082 | |
| 4 | G | R | 0.0000 | |
| 5 | H | R | 0.2646 | |
| 6 | F | R | 2.7289 | |
| 7 | F | R | 2.4401 | |
| 1 | G | S | -1.4123 | |
| 2 | S | S | -1.6923 | |
| 3 | K | S | -2.6434 | |
| 4 | G | S | -1.1014 | |
| 5 | H | S | -0.5818 | |
| 6 | F | S | 2.1886 | |
| 7 | F | S | 0.0000 | |
| 1 | G | T | -1.3739 | |
| 2 | S | T | -1.6623 | |
| 3 | K | T | -2.3642 | |
| 4 | G | T | -0.8956 | |
| 5 | H | T | -0.0306 | |
| 6 | F | T | 2.3646 | |
| 7 | F | T | 1.9797 |