Project name: query_structure

Status: done

Started: 2026-03-16 22:52:38
Settings
Chain sequence(s) A: ACSKKWEYCIVPILGFVYCCPGLICGPFVCV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:08)
Show buried residues

Minimal score value
-0.811
Maximal score value
3.8431
Average score
1.5565
Total score value
48.2511

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 0.5400
2 C A 0.9252
3 S A 0.0000
4 K A -0.8110
5 K A 0.2027
6 W A 0.9310
7 E A 0.0616
8 Y A 1.6743
9 C A 0.0000
10 I A 3.2068
11 V A 3.4716
12 P A 2.5769
13 I A 3.2759
14 L A 2.8893
15 G A 2.4610
16 F A 3.8431
17 V A 3.4860
18 Y A 2.9754
19 C A 1.5498
20 C A 0.4191
21 P A 0.1491
22 G A 0.2726
23 L A 1.5417
24 I A 2.8036
25 C A 0.0000
26 G A 1.8366
27 P A 1.3150
28 F A 2.6619
29 V A 2.1601
30 C A 0.0000
31 V A 1.8318
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018