| Chain sequence(s) |
A: GGKGHFG
C: GGKGHFG B: GGKGHFG D: GGKGHFG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:42)
[INFO] Main: Simulation completed successfully. (00:01:43)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.3529 | |
| 2 | G | A | -1.4884 | |
| 3 | K | A | -1.9672 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -1.7909 | |
| 6 | F | A | -1.1749 | |
| 7 | G | A | -0.7329 | |
| 1 | G | B | -1.0610 | |
| 2 | G | B | -1.3931 | |
| 3 | K | B | -2.3172 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -2.1264 | |
| 6 | F | B | -1.3229 | |
| 7 | G | B | -1.6664 | |
| 1 | G | C | -0.7930 | |
| 2 | G | C | -1.0952 | |
| 3 | K | C | -2.4173 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -2.1267 | |
| 6 | F | C | -1.7007 | |
| 7 | G | C | -1.3676 | |
| 1 | G | D | -1.6480 | |
| 2 | G | D | -2.3867 | |
| 3 | K | D | -2.9457 | |
| 4 | G | D | -2.0964 | |
| 5 | H | D | -2.0254 | |
| 6 | F | D | 0.3366 | |
| 7 | G | D | -0.4251 |