| Chain sequence(s) |
A: FGGHKGF
C: FGGHKGF B: FGGHKGF E: FGGHKGF D: FGGHKGF G: FGGHKGF F: FGGHKGF I: FGGHKGF H: FGGHKGF K: FGGHKGF J: FGGHKGF L: FGGHKGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:02)
[INFO] Main: Simulation completed successfully. (00:02:04)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.3334 | |
| 2 | G | A | 0.0260 | |
| 3 | G | A | -1.3396 | |
| 4 | H | A | -2.6194 | |
| 5 | K | A | -2.6802 | |
| 6 | G | A | -0.9144 | |
| 7 | F | A | 1.1141 | |
| 1 | F | B | 3.4224 | |
| 2 | G | B | 0.8477 | |
| 3 | G | B | -1.2462 | |
| 4 | H | B | -2.3066 | |
| 5 | K | B | -2.9017 | |
| 6 | G | B | -0.9128 | |
| 7 | F | B | 1.3244 | |
| 1 | F | C | 3.2785 | |
| 2 | G | C | 0.0000 | |
| 3 | G | C | -0.8424 | |
| 4 | H | C | -2.1179 | |
| 5 | K | C | -2.2515 | |
| 6 | G | C | -0.9339 | |
| 7 | F | C | 1.3188 | |
| 1 | F | D | 2.5978 | |
| 2 | G | D | 0.0000 | |
| 3 | G | D | -1.0757 | |
| 4 | H | D | -2.4606 | |
| 5 | K | D | -2.7003 | |
| 6 | G | D | -0.9909 | |
| 7 | F | D | 1.1505 | |
| 1 | F | E | 2.5861 | |
| 2 | G | E | 0.0000 | |
| 3 | G | E | -1.2339 | |
| 4 | H | E | -2.6086 | |
| 5 | K | E | -2.6044 | |
| 6 | G | E | -0.6859 | |
| 7 | F | E | 1.3628 | |
| 1 | F | F | 2.7112 | |
| 2 | G | F | 0.7642 | |
| 3 | G | F | -1.1950 | |
| 4 | H | F | -2.4507 | |
| 5 | K | F | -2.7872 | |
| 6 | G | F | -0.9317 | |
| 7 | F | F | 1.3353 | |
| 1 | F | G | 3.0944 | |
| 2 | G | G | 0.0583 | |
| 3 | G | G | -1.3844 | |
| 4 | H | G | -2.5369 | |
| 5 | K | G | -2.7276 | |
| 6 | G | G | -0.7758 | |
| 7 | F | G | 1.3787 | |
| 1 | F | H | 3.5286 | |
| 2 | G | H | 0.3950 | |
| 3 | G | H | -1.2681 | |
| 4 | H | H | -2.6549 | |
| 5 | K | H | -2.7498 | |
| 6 | G | H | -0.8886 | |
| 7 | F | H | 1.1019 | |
| 1 | F | I | 3.1948 | |
| 2 | G | I | 0.3996 | |
| 3 | G | I | -1.0537 | |
| 4 | H | I | -2.3031 | |
| 5 | K | I | -2.4637 | |
| 6 | G | I | -0.8314 | |
| 7 | F | I | 1.0872 | |
| 1 | F | J | 2.9391 | |
| 2 | G | J | -0.0468 | |
| 3 | G | J | -1.3243 | |
| 4 | H | J | -2.4100 | |
| 5 | K | J | -2.4395 | |
| 6 | G | J | -0.7547 | |
| 7 | F | J | 1.2160 | |
| 1 | F | K | 2.6434 | |
| 2 | G | K | -0.1180 | |
| 3 | G | K | -1.3777 | |
| 4 | H | K | -2.3780 | |
| 5 | K | K | -2.3046 | |
| 6 | G | K | -0.5455 | |
| 7 | F | K | 1.2367 | |
| 1 | F | L | 1.5275 | |
| 2 | G | L | -0.3305 | |
| 3 | G | L | -1.9144 | |
| 4 | H | L | -2.6439 | |
| 5 | K | L | -2.5366 | |
| 6 | G | L | -0.5926 | |
| 7 | F | L | 1.2145 |